Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.96■□□□□ 0.95
CLIP4Q8N3C7 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLIP4Q8N3C7 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLIP4Q8N3C7 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CLIP4Q8N3C7 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLIP4Q8N3C7 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CLIP4Q8N3C7 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CLIP4Q8N3C7 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
CLIP4Q8N3C7 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLIP4Q8N3C7 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.95■□□□□ 0.94
CLIP4Q8N3C7 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.95■□□□□ 0.94
CLIP4Q8N3C7 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLIP4Q8N3C7 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
CLIP4Q8N3C7 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.95■□□□□ 0.94
CLIP4Q8N3C7 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.95■□□□□ 0.94
CLIP4Q8N3C7 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLIP4Q8N3C7 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLIP4Q8N3C7 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
CLIP4Q8N3C7 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.94■□□□□ 0.94
CLIP4Q8N3C7 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLIP4Q8N3C7 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.94■□□□□ 0.94
CLIP4Q8N3C7 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
CLIP4Q8N3C7 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.94■□□□□ 0.94
CLIP4Q8N3C7 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC20.94■□□□□ 0.94
CLIP4Q8N3C7 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC20.94■□□□□ 0.94
CLIP4Q8N3C7 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CLIP4Q8N3C7 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLIP4Q8N3C7 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLIP4Q8N3C7 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CLIP4Q8N3C7 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CLIP4Q8N3C7 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.93■□□□□ 0.94
CLIP4Q8N3C7 AC103724.3-201ENST00000564481 992 ntBASIC20.93■□□□□ 0.94
CLIP4Q8N3C7 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLIP4Q8N3C7 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
CLIP4Q8N3C7 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.93■□□□□ 0.94
CLIP4Q8N3C7 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.93■□□□□ 0.94
CLIP4Q8N3C7 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
CLIP4Q8N3C7 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLIP4Q8N3C7 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLIP4Q8N3C7 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CLIP4Q8N3C7 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
CLIP4Q8N3C7 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
CLIP4Q8N3C7 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
CLIP4Q8N3C7 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
CLIP4Q8N3C7 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLIP4Q8N3C7 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLIP4Q8N3C7 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLIP4Q8N3C7 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.92■□□□□ 0.94
CLIP4Q8N3C7 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLIP4Q8N3C7 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLIP4Q8N3C7 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
CLIP4Q8N3C7 AC092068.2-201ENST00000590491 1708 ntBASIC20.92■□□□□ 0.94
CLIP4Q8N3C7 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLIP4Q8N3C7 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLIP4Q8N3C7 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLIP4Q8N3C7 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.92■□□□□ 0.94
CLIP4Q8N3C7 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
CLIP4Q8N3C7 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLIP4Q8N3C7 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLIP4Q8N3C7 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLIP4Q8N3C7 YBX1P4-201ENST00000392794 808 ntBASIC20.91■□□□□ 0.94
CLIP4Q8N3C7 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.91■□□□□ 0.94
CLIP4Q8N3C7 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.91■□□□□ 0.94
CLIP4Q8N3C7 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC20.9■□□□□ 0.94
CLIP4Q8N3C7 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CLIP4Q8N3C7 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLIP4Q8N3C7 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLIP4Q8N3C7 AC004448.1-201ENST00000458332 883 ntBASIC20.9■□□□□ 0.94
CLIP4Q8N3C7 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.9■□□□□ 0.94
CLIP4Q8N3C7 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.9■□□□□ 0.94
CLIP4Q8N3C7 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.9■□□□□ 0.94
CLIP4Q8N3C7 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.9■□□□□ 0.94
CLIP4Q8N3C7 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLIP4Q8N3C7 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
CLIP4Q8N3C7 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
CLIP4Q8N3C7 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
CLIP4Q8N3C7 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
CLIP4Q8N3C7 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
CLIP4Q8N3C7 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CLIP4Q8N3C7 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLIP4Q8N3C7 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.89■□□□□ 0.93
CLIP4Q8N3C7 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLIP4Q8N3C7 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLIP4Q8N3C7 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
CLIP4Q8N3C7 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLIP4Q8N3C7 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
CLIP4Q8N3C7 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
CLIP4Q8N3C7 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLIP4Q8N3C7 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.88■□□□□ 0.93
CLIP4Q8N3C7 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CLIP4Q8N3C7 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLIP4Q8N3C7 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
CLIP4Q8N3C7 AL117328.2-201ENST00000624617 1940 ntBASIC20.87■□□□□ 0.93
CLIP4Q8N3C7 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
CLIP4Q8N3C7 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLIP4Q8N3C7 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLIP4Q8N3C7 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLIP4Q8N3C7 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLIP4Q8N3C7 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLIP4Q8N3C7 DUSP8P3-201ENST00000399571 1760 ntBASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms