Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
DEPDC4Q8N2C3 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
DEPDC4Q8N2C3 IDNK-201ENST00000376417 511 ntTSL 5 BASIC20.78■□□□□ 0.92
DEPDC4Q8N2C3 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
DEPDC4Q8N2C3 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC20.78■□□□□ 0.92
DEPDC4Q8N2C3 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.78■□□□□ 0.92
DEPDC4Q8N2C3 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
DEPDC4Q8N2C3 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
DEPDC4Q8N2C3 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
DEPDC4Q8N2C3 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
DEPDC4Q8N2C3 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
DEPDC4Q8N2C3 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
DEPDC4Q8N2C3 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
DEPDC4Q8N2C3 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
DEPDC4Q8N2C3 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.77■□□□□ 0.92
DEPDC4Q8N2C3 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
DEPDC4Q8N2C3 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
DEPDC4Q8N2C3 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
DEPDC4Q8N2C3 MIR4508-201ENST00000584178 70 ntBASIC20.77■□□□□ 0.92
DEPDC4Q8N2C3 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
DEPDC4Q8N2C3 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.77■□□□□ 0.92
DEPDC4Q8N2C3 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
DEPDC4Q8N2C3 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.91
DEPDC4Q8N2C3 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
DEPDC4Q8N2C3 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
DEPDC4Q8N2C3 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
DEPDC4Q8N2C3 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
DEPDC4Q8N2C3 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.76■□□□□ 0.91
DEPDC4Q8N2C3 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
DEPDC4Q8N2C3 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.76■□□□□ 0.91
DEPDC4Q8N2C3 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
DEPDC4Q8N2C3 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.76■□□□□ 0.91
DEPDC4Q8N2C3 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.76■□□□□ 0.91
DEPDC4Q8N2C3 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
DEPDC4Q8N2C3 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.75■□□□□ 0.91
DEPDC4Q8N2C3 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.75■□□□□ 0.91
DEPDC4Q8N2C3 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.75■□□□□ 0.91
DEPDC4Q8N2C3 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
DEPDC4Q8N2C3 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
DEPDC4Q8N2C3 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
DEPDC4Q8N2C3 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
DEPDC4Q8N2C3 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
DEPDC4Q8N2C3 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
DEPDC4Q8N2C3 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC20.75■□□□□ 0.91
DEPDC4Q8N2C3 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
DEPDC4Q8N2C3 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
DEPDC4Q8N2C3 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
DEPDC4Q8N2C3 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
DEPDC4Q8N2C3 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
DEPDC4Q8N2C3 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.74■□□□□ 0.91
DEPDC4Q8N2C3 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.74■□□□□ 0.91
DEPDC4Q8N2C3 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.74■□□□□ 0.91
DEPDC4Q8N2C3 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
DEPDC4Q8N2C3 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
DEPDC4Q8N2C3 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
DEPDC4Q8N2C3 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
DEPDC4Q8N2C3 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.74■□□□□ 0.91
DEPDC4Q8N2C3 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 PVT1_1.1-201ENST00000615125 194 ntBASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
DEPDC4Q8N2C3 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
DEPDC4Q8N2C3 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.72■□□□□ 0.91
DEPDC4Q8N2C3 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
DEPDC4Q8N2C3 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
DEPDC4Q8N2C3 LONRF2P2-201ENST00000439212 571 ntBASIC20.72■□□□□ 0.91
DEPDC4Q8N2C3 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
DEPDC4Q8N2C3 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC20.72■□□□□ 0.91
DEPDC4Q8N2C3 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
DEPDC4Q8N2C3 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.72■□□□□ 0.91
DEPDC4Q8N2C3 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.72■□□□□ 0.91
DEPDC4Q8N2C3 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.71■□□□□ 0.91
DEPDC4Q8N2C3 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC20.71■□□□□ 0.91
DEPDC4Q8N2C3 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
DEPDC4Q8N2C3 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
DEPDC4Q8N2C3 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
DEPDC4Q8N2C3 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC20.71■□□□□ 0.91
DEPDC4Q8N2C3 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.71■□□□□ 0.91
DEPDC4Q8N2C3 AC022616.5-201ENST00000518796 181 ntBASIC20.71■□□□□ 0.91
DEPDC4Q8N2C3 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.71■□□□□ 0.91
DEPDC4Q8N2C3 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
DEPDC4Q8N2C3 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
DEPDC4Q8N2C3 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms