Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
DEPDC4Q8N2C3 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
DEPDC4Q8N2C3 IDNK-201ENST00000376417 511 ntTSL 5 BASIC20.78■□□□□ 0.92
DEPDC4Q8N2C3 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
DEPDC4Q8N2C3 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC20.78■□□□□ 0.92
DEPDC4Q8N2C3 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.78■□□□□ 0.92
DEPDC4Q8N2C3 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
DEPDC4Q8N2C3 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
DEPDC4Q8N2C3 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
DEPDC4Q8N2C3 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
DEPDC4Q8N2C3 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
DEPDC4Q8N2C3 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
DEPDC4Q8N2C3 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
DEPDC4Q8N2C3 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
DEPDC4Q8N2C3 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.77■□□□□ 0.92
DEPDC4Q8N2C3 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
DEPDC4Q8N2C3 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
DEPDC4Q8N2C3 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
DEPDC4Q8N2C3 MIR4508-201ENST00000584178 70 ntBASIC20.77■□□□□ 0.92
DEPDC4Q8N2C3 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
DEPDC4Q8N2C3 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.77■□□□□ 0.92
DEPDC4Q8N2C3 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
DEPDC4Q8N2C3 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.91
DEPDC4Q8N2C3 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
DEPDC4Q8N2C3 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
DEPDC4Q8N2C3 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
DEPDC4Q8N2C3 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
DEPDC4Q8N2C3 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.76■□□□□ 0.91
DEPDC4Q8N2C3 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
DEPDC4Q8N2C3 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.76■□□□□ 0.91
DEPDC4Q8N2C3 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
DEPDC4Q8N2C3 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.76■□□□□ 0.91
DEPDC4Q8N2C3 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.76■□□□□ 0.91
DEPDC4Q8N2C3 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
DEPDC4Q8N2C3 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.75■□□□□ 0.91
DEPDC4Q8N2C3 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.75■□□□□ 0.91
DEPDC4Q8N2C3 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.75■□□□□ 0.91
DEPDC4Q8N2C3 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
DEPDC4Q8N2C3 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
DEPDC4Q8N2C3 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
DEPDC4Q8N2C3 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
DEPDC4Q8N2C3 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
DEPDC4Q8N2C3 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
DEPDC4Q8N2C3 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC20.75■□□□□ 0.91
DEPDC4Q8N2C3 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
DEPDC4Q8N2C3 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
DEPDC4Q8N2C3 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
DEPDC4Q8N2C3 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
DEPDC4Q8N2C3 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
DEPDC4Q8N2C3 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.74■□□□□ 0.91
DEPDC4Q8N2C3 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.74■□□□□ 0.91
DEPDC4Q8N2C3 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.74■□□□□ 0.91
DEPDC4Q8N2C3 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
DEPDC4Q8N2C3 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
DEPDC4Q8N2C3 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
DEPDC4Q8N2C3 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
DEPDC4Q8N2C3 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.74■□□□□ 0.91
DEPDC4Q8N2C3 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 PVT1_1.1-201ENST00000615125 194 ntBASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
DEPDC4Q8N2C3 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
DEPDC4Q8N2C3 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
DEPDC4Q8N2C3 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.72■□□□□ 0.91
DEPDC4Q8N2C3 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
DEPDC4Q8N2C3 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
DEPDC4Q8N2C3 LONRF2P2-201ENST00000439212 571 ntBASIC20.72■□□□□ 0.91
DEPDC4Q8N2C3 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
DEPDC4Q8N2C3 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC20.72■□□□□ 0.91
DEPDC4Q8N2C3 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
DEPDC4Q8N2C3 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC20.72■□□□□ 0.91
DEPDC4Q8N2C3 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.72■□□□□ 0.91
DEPDC4Q8N2C3 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.71■□□□□ 0.91
DEPDC4Q8N2C3 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC20.71■□□□□ 0.91
DEPDC4Q8N2C3 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
DEPDC4Q8N2C3 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
DEPDC4Q8N2C3 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
DEPDC4Q8N2C3 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC20.71■□□□□ 0.91
DEPDC4Q8N2C3 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.71■□□□□ 0.91
DEPDC4Q8N2C3 AC022616.5-201ENST00000518796 181 ntBASIC20.71■□□□□ 0.91
DEPDC4Q8N2C3 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.71■□□□□ 0.91
DEPDC4Q8N2C3 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
DEPDC4Q8N2C3 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
DEPDC4Q8N2C3 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms