Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
LINC00643Q86TS7 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
LINC00643Q86TS7 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LINC00643Q86TS7 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
LINC00643Q86TS7 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
LINC00643Q86TS7 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
LINC00643Q86TS7 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LINC00643Q86TS7 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LINC00643Q86TS7 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
LINC00643Q86TS7 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC14.16□□□□□ -0.14
LINC00643Q86TS7 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC14.16□□□□□ -0.14
LINC00643Q86TS7 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
LINC00643Q86TS7 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
LINC00643Q86TS7 C11orf96-202ENST00000528572 1834 ntBASIC14.15□□□□□ -0.14
LINC00643Q86TS7 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LINC00643Q86TS7 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
LINC00643Q86TS7 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
LINC00643Q86TS7 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LINC00643Q86TS7 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
LINC00643Q86TS7 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LINC00643Q86TS7 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LINC00643Q86TS7 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC14.15□□□□□ -0.14
LINC00643Q86TS7 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
LINC00643Q86TS7 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
LINC00643Q86TS7 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC14.15□□□□□ -0.14
LINC00643Q86TS7 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.15
LINC00643Q86TS7 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LINC00643Q86TS7 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LINC00643Q86TS7 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LINC00643Q86TS7 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
LINC00643Q86TS7 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC14.14□□□□□ -0.15
LINC00643Q86TS7 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
LINC00643Q86TS7 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
LINC00643Q86TS7 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
LINC00643Q86TS7 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
LINC00643Q86TS7 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
LINC00643Q86TS7 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LINC00643Q86TS7 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LINC00643Q86TS7 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
LINC00643Q86TS7 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LINC00643Q86TS7 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
LINC00643Q86TS7 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LINC00643Q86TS7 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LINC00643Q86TS7 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LINC00643Q86TS7 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC14.13□□□□□ -0.15
LINC00643Q86TS7 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LINC00643Q86TS7 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
LINC00643Q86TS7 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
LINC00643Q86TS7 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
LINC00643Q86TS7 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LINC00643Q86TS7 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC14.12□□□□□ -0.15
LINC00643Q86TS7 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
LINC00643Q86TS7 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
LINC00643Q86TS7 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LINC00643Q86TS7 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
LINC00643Q86TS7 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LINC00643Q86TS7 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LINC00643Q86TS7 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC14.12□□□□□ -0.15
LINC00643Q86TS7 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LINC00643Q86TS7 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
LINC00643Q86TS7 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
LINC00643Q86TS7 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
LINC00643Q86TS7 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
LINC00643Q86TS7 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LINC00643Q86TS7 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
LINC00643Q86TS7 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LINC00643Q86TS7 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
LINC00643Q86TS7 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00643Q86TS7 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
LINC00643Q86TS7 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00643Q86TS7 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00643Q86TS7 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00643Q86TS7 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00643Q86TS7 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC14.11□□□□□ -0.15
LINC00643Q86TS7 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00643Q86TS7 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC14.11□□□□□ -0.15
LINC00643Q86TS7 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00643Q86TS7 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00643Q86TS7 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC14.11□□□□□ -0.15
LINC00643Q86TS7 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00643Q86TS7 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00643Q86TS7 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LINC00643Q86TS7 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
LINC00643Q86TS7 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00643Q86TS7 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
LINC00643Q86TS7 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00643Q86TS7 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00643Q86TS7 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
LINC00643Q86TS7 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC14.1□□□□□ -0.15
LINC00643Q86TS7 ANOS2P-203ENST00000472227 1816 ntBASIC14.1□□□□□ -0.15
LINC00643Q86TS7 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00643Q86TS7 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00643Q86TS7 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00643Q86TS7 ESRRAP2-201ENST00000418437 1549 ntBASIC14.1□□□□□ -0.15
LINC00643Q86TS7 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00643Q86TS7 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
LINC00643Q86TS7 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC14.1□□□□□ -0.15
LINC00643Q86TS7 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00643Q86TS7 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
LINC00643Q86TS7 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms