Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 LHPP-203ENST00000392757 840 ntTSL 3 BASIC31.01■■■□□ 2.56
NPHP3Q7Z494 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
NPHP3Q7Z494 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC31.01■■■□□ 2.56
NPHP3Q7Z494 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC31.01■■■□□ 2.56
NPHP3Q7Z494 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.56
NPHP3Q7Z494 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC31.01■■■□□ 2.55
NPHP3Q7Z494 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
NPHP3Q7Z494 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
NPHP3Q7Z494 NT5C3AP1-201ENST00000394500 1012 ntBASIC31■■■□□ 2.55
NPHP3Q7Z494 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC31■■■□□ 2.55
NPHP3Q7Z494 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC31■■■□□ 2.55
NPHP3Q7Z494 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC31■■■□□ 2.55
NPHP3Q7Z494 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC31■■■□□ 2.55
NPHP3Q7Z494 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC31■■■□□ 2.55
NPHP3Q7Z494 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
NPHP3Q7Z494 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC30.99■■■□□ 2.55
NPHP3Q7Z494 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC30.99■■■□□ 2.55
NPHP3Q7Z494 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
NPHP3Q7Z494 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC30.99■■■□□ 2.55
NPHP3Q7Z494 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC30.99■■■□□ 2.55
NPHP3Q7Z494 GXYLT1P5-201ENST00000614548 1189 ntBASIC30.99■■■□□ 2.55
NPHP3Q7Z494 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
NPHP3Q7Z494 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC30.99■■■□□ 2.55
NPHP3Q7Z494 MPST-204ENST00000404393 1329 ntTSL 5 BASIC30.99■■■□□ 2.55
NPHP3Q7Z494 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
NPHP3Q7Z494 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
NPHP3Q7Z494 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC30.99■■■□□ 2.55
NPHP3Q7Z494 ABHD17AP1-201ENST00000358206 933 ntBASIC30.98■■■□□ 2.55
NPHP3Q7Z494 CDCA4P2-201ENST00000441182 718 ntBASIC30.98■■■□□ 2.55
NPHP3Q7Z494 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC30.98■■■□□ 2.55
NPHP3Q7Z494 KRT18P61-201ENST00000585825 1298 ntBASIC30.98■■■□□ 2.55
NPHP3Q7Z494 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC30.98■■■□□ 2.55
NPHP3Q7Z494 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
NPHP3Q7Z494 PKM-203ENST00000389093 2279 ntTSL 5 BASIC30.98■■■□□ 2.55
NPHP3Q7Z494 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
NPHP3Q7Z494 LSR-205ENST00000427250 1606 ntTSL 2 BASIC30.98■■■□□ 2.55
NPHP3Q7Z494 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC30.98■■■□□ 2.55
NPHP3Q7Z494 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC30.98■■■□□ 2.55
NPHP3Q7Z494 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
NPHP3Q7Z494 AC073111.5-205ENST00000641717 521 ntBASIC30.98■■■□□ 2.55
NPHP3Q7Z494 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
NPHP3Q7Z494 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC30.97■■■□□ 2.55
NPHP3Q7Z494 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
NPHP3Q7Z494 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC30.97■■■□□ 2.55
NPHP3Q7Z494 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC30.97■■■□□ 2.55
NPHP3Q7Z494 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC30.97■■■□□ 2.55
NPHP3Q7Z494 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC30.97■■■□□ 2.55
NPHP3Q7Z494 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
NPHP3Q7Z494 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
NPHP3Q7Z494 OR2I1P-207ENST00000453522 948 ntBASIC30.97■■■□□ 2.55
NPHP3Q7Z494 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC30.97■■■□□ 2.55
NPHP3Q7Z494 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
NPHP3Q7Z494 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC30.96■■■□□ 2.55
NPHP3Q7Z494 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC30.96■■■□□ 2.55
NPHP3Q7Z494 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC30.96■■■□□ 2.55
NPHP3Q7Z494 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC30.96■■■□□ 2.55
NPHP3Q7Z494 AC010525.1-201ENST00000585559 441 ntBASIC30.96■■■□□ 2.55
NPHP3Q7Z494 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC30.96■■■□□ 2.55
NPHP3Q7Z494 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC30.96■■■□□ 2.55
NPHP3Q7Z494 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
NPHP3Q7Z494 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC30.95■■■□□ 2.55
NPHP3Q7Z494 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC30.95■■■□□ 2.55
NPHP3Q7Z494 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC30.95■■■□□ 2.54
NPHP3Q7Z494 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC30.95■■■□□ 2.54
NPHP3Q7Z494 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC30.95■■■□□ 2.54
NPHP3Q7Z494 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
NPHP3Q7Z494 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC30.94■■■□□ 2.54
NPHP3Q7Z494 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC30.94■■■□□ 2.54
NPHP3Q7Z494 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
NPHP3Q7Z494 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC30.94■■■□□ 2.54
NPHP3Q7Z494 AC092803.2-201ENST00000564287 1899 ntBASIC30.94■■■□□ 2.54
NPHP3Q7Z494 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC30.94■■■□□ 2.54
NPHP3Q7Z494 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC30.94■■■□□ 2.54
NPHP3Q7Z494 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
NPHP3Q7Z494 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
NPHP3Q7Z494 GAS2L1P2-201ENST00000436355 1356 ntBASIC30.94■■■□□ 2.54
NPHP3Q7Z494 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
NPHP3Q7Z494 AC091060.1-201ENST00000623524 1766 ntBASIC30.93■■■□□ 2.54
NPHP3Q7Z494 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC30.93■■■□□ 2.54
NPHP3Q7Z494 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
NPHP3Q7Z494 AC104771.1-201ENST00000603335 964 ntBASIC30.93■■■□□ 2.54
NPHP3Q7Z494 AL499627.2-201ENST00000606283 725 ntBASIC30.93■■■□□ 2.54
NPHP3Q7Z494 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC30.92■■■□□ 2.54
NPHP3Q7Z494 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
NPHP3Q7Z494 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC30.92■■■□□ 2.54
NPHP3Q7Z494 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC30.92■■■□□ 2.54
NPHP3Q7Z494 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
NPHP3Q7Z494 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC30.92■■■□□ 2.54
NPHP3Q7Z494 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC30.91■■■□□ 2.54
NPHP3Q7Z494 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC30.91■■■□□ 2.54
NPHP3Q7Z494 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC30.91■■■□□ 2.54
NPHP3Q7Z494 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC30.91■■■□□ 2.54
NPHP3Q7Z494 AC016769.1-201ENST00000409132 1010 ntBASIC30.91■■■□□ 2.54
NPHP3Q7Z494 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC30.91■■■□□ 2.54
NPHP3Q7Z494 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC30.9■■■□□ 2.54
NPHP3Q7Z494 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC30.9■■■□□ 2.54
NPHP3Q7Z494 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC30.9■■■□□ 2.54
NPHP3Q7Z494 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
NPHP3Q7Z494 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
NPHP3Q7Z494 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC30.9■■■□□ 2.54
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms