Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
CCDC144BQ3MJ40 AC026271.2-201ENST00000428091 497 ntBASIC26.07■■□□□ 1.76
CCDC144BQ3MJ40 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC26.07■■□□□ 1.76
CCDC144BQ3MJ40 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC26.07■■□□□ 1.76
CCDC144BQ3MJ40 LGR4-203ENST00000480977 492 ntTSL 2 BASIC26.07■■□□□ 1.76
CCDC144BQ3MJ40 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC26.07■■□□□ 1.76
CCDC144BQ3MJ40 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC26.07■■□□□ 1.76
CCDC144BQ3MJ40 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC26.07■■□□□ 1.76
CCDC144BQ3MJ40 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
CCDC144BQ3MJ40 AC079834.2-201ENST00000609776 1949 ntBASIC26.06■■□□□ 1.76
CCDC144BQ3MJ40 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
CCDC144BQ3MJ40 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
CCDC144BQ3MJ40 DUX4L19-201ENST00000557448 1267 ntBASIC26.06■■□□□ 1.76
CCDC144BQ3MJ40 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC26.06■■□□□ 1.76
CCDC144BQ3MJ40 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC26.06■■□□□ 1.76
CCDC144BQ3MJ40 AL136967.2-201ENST00000623968 743 ntBASIC26.06■■□□□ 1.76
CCDC144BQ3MJ40 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC26.06■■□□□ 1.76
CCDC144BQ3MJ40 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
CCDC144BQ3MJ40 REST-206ENST00000612429 1376 ntTSL 5 BASIC26.06■■□□□ 1.76
CCDC144BQ3MJ40 REST-207ENST00000616975 1370 ntTSL 5 BASIC26.06■■□□□ 1.76
CCDC144BQ3MJ40 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
CCDC144BQ3MJ40 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
CCDC144BQ3MJ40 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC26.05■■□□□ 1.76
CCDC144BQ3MJ40 AC131274.2-201ENST00000580697 1507 ntBASIC26.05■■□□□ 1.76
CCDC144BQ3MJ40 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC26.05■■□□□ 1.76
CCDC144BQ3MJ40 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
CCDC144BQ3MJ40 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC26.05■■□□□ 1.76
CCDC144BQ3MJ40 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
CCDC144BQ3MJ40 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC26.05■■□□□ 1.76
CCDC144BQ3MJ40 GRAMD4P4-201ENST00000613563 1115 ntBASIC26.05■■□□□ 1.76
CCDC144BQ3MJ40 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
CCDC144BQ3MJ40 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
CCDC144BQ3MJ40 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
CCDC144BQ3MJ40 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
CCDC144BQ3MJ40 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC26.04■■□□□ 1.76
CCDC144BQ3MJ40 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
CCDC144BQ3MJ40 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC26.04■■□□□ 1.76
CCDC144BQ3MJ40 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC26.04■■□□□ 1.76
CCDC144BQ3MJ40 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
CCDC144BQ3MJ40 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC26.04■■□□□ 1.76
CCDC144BQ3MJ40 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
CCDC144BQ3MJ40 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC26.04■■□□□ 1.76
CCDC144BQ3MJ40 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
CCDC144BQ3MJ40 C9orf163-202ENST00000624034 2573 ntBASIC26.03■■□□□ 1.76
CCDC144BQ3MJ40 AC141586.4-201ENST00000624558 1573 ntBASIC26.03■■□□□ 1.76
CCDC144BQ3MJ40 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
CCDC144BQ3MJ40 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC26.03■■□□□ 1.76
CCDC144BQ3MJ40 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
CCDC144BQ3MJ40 AF213884.3-201ENST00000563833 479 ntBASIC26.03■■□□□ 1.76
CCDC144BQ3MJ40 SF1-220ENST00000626028 704 ntTSL 2 BASIC26.03■■□□□ 1.76
CCDC144BQ3MJ40 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC144BQ3MJ40 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC144BQ3MJ40 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC144BQ3MJ40 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC144BQ3MJ40 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC144BQ3MJ40 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC144BQ3MJ40 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC26.02■■□□□ 1.76
CCDC144BQ3MJ40 AC105265.2-201ENST00000467189 838 ntBASIC26.02■■□□□ 1.76
CCDC144BQ3MJ40 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC26.02■■□□□ 1.76
CCDC144BQ3MJ40 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC144BQ3MJ40 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC144BQ3MJ40 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC26.02■■□□□ 1.76
CCDC144BQ3MJ40 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC144BQ3MJ40 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC144BQ3MJ40 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC144BQ3MJ40 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CCDC144BQ3MJ40 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
CCDC144BQ3MJ40 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
CCDC144BQ3MJ40 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
CCDC144BQ3MJ40 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
CCDC144BQ3MJ40 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC26.01■■□□□ 1.75
CCDC144BQ3MJ40 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
CCDC144BQ3MJ40 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
CCDC144BQ3MJ40 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
CCDC144BQ3MJ40 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CCDC144BQ3MJ40 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC26■■□□□ 1.75
CCDC144BQ3MJ40 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC26■■□□□ 1.75
CCDC144BQ3MJ40 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CCDC144BQ3MJ40 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC26■■□□□ 1.75
CCDC144BQ3MJ40 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC26■■□□□ 1.75
CCDC144BQ3MJ40 SYT6-210ENST00000641643 1587 ntBASIC26■■□□□ 1.75
CCDC144BQ3MJ40 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC26■■□□□ 1.75
CCDC144BQ3MJ40 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CCDC144BQ3MJ40 MIR939-201ENST00000401314 82 ntBASIC26■■□□□ 1.75
CCDC144BQ3MJ40 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC26■■□□□ 1.75
CCDC144BQ3MJ40 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC26■■□□□ 1.75
CCDC144BQ3MJ40 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC26■■□□□ 1.75
CCDC144BQ3MJ40 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC26■■□□□ 1.75
CCDC144BQ3MJ40 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC26■■□□□ 1.75
CCDC144BQ3MJ40 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC25.99■■□□□ 1.75
CCDC144BQ3MJ40 ABCB10P4-201ENST00000566803 2184 ntBASIC25.99■■□□□ 1.75
CCDC144BQ3MJ40 AP001330.3-201ENST00000520123 633 ntBASIC25.99■■□□□ 1.75
CCDC144BQ3MJ40 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC25.99■■□□□ 1.75
CCDC144BQ3MJ40 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
CCDC144BQ3MJ40 AC092666.2-201ENST00000613287 246 ntBASIC25.99■■□□□ 1.75
CCDC144BQ3MJ40 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC25.99■■□□□ 1.75
CCDC144BQ3MJ40 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
CCDC144BQ3MJ40 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC25.99■■□□□ 1.75
CCDC144BQ3MJ40 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC25.99■■□□□ 1.75
CCDC144BQ3MJ40 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms