Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC20.87■□□□□ 0.93
RFX4Q33E94 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.87■□□□□ 0.93
RFX4Q33E94 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.87■□□□□ 0.93
RFX4Q33E94 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RFX4Q33E94 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RFX4Q33E94 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
RFX4Q33E94 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RFX4Q33E94 AC090877.2-201ENST00000558441 1738 ntBASIC20.87■□□□□ 0.93
RFX4Q33E94 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
RFX4Q33E94 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RFX4Q33E94 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
RFX4Q33E94 AC007375.3-201ENST00000600936 2314 ntBASIC20.86■□□□□ 0.93
RFX4Q33E94 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RFX4Q33E94 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
RFX4Q33E94 AC087393.1-201ENST00000582896 145 ntBASIC20.86■□□□□ 0.93
RFX4Q33E94 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC20.86■□□□□ 0.93
RFX4Q33E94 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC20.86■□□□□ 0.93
RFX4Q33E94 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.86■□□□□ 0.93
RFX4Q33E94 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RFX4Q33E94 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
RFX4Q33E94 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC20.86■□□□□ 0.93
RFX4Q33E94 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RFX4Q33E94 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.86■□□□□ 0.93
RFX4Q33E94 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
RFX4Q33E94 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.86■□□□□ 0.93
RFX4Q33E94 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RFX4Q33E94 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
RFX4Q33E94 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
RFX4Q33E94 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RFX4Q33E94 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.85■□□□□ 0.93
RFX4Q33E94 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RFX4Q33E94 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RFX4Q33E94 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
RFX4Q33E94 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
RFX4Q33E94 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.84■□□□□ 0.93
RFX4Q33E94 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RFX4Q33E94 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
RFX4Q33E94 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RFX4Q33E94 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
RFX4Q33E94 IDNK-203ENST00000405990 629 ntTSL 2 BASIC20.84■□□□□ 0.93
RFX4Q33E94 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC20.84■□□□□ 0.93
RFX4Q33E94 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RFX4Q33E94 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
RFX4Q33E94 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
RFX4Q33E94 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RFX4Q33E94 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.84■□□□□ 0.93
RFX4Q33E94 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.84■□□□□ 0.93
RFX4Q33E94 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.84■□□□□ 0.93
RFX4Q33E94 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.83■□□□□ 0.93
RFX4Q33E94 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.83■□□□□ 0.93
RFX4Q33E94 AL592295.1-201ENST00000400984 884 ntBASIC20.83■□□□□ 0.93
RFX4Q33E94 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.83■□□□□ 0.93
RFX4Q33E94 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
RFX4Q33E94 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
RFX4Q33E94 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
RFX4Q33E94 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
RFX4Q33E94 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC20.83■□□□□ 0.92
RFX4Q33E94 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
RFX4Q33E94 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RFX4Q33E94 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RFX4Q33E94 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
RFX4Q33E94 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RFX4Q33E94 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC20.82■□□□□ 0.92
RFX4Q33E94 HYI-213ENST00000583037 1322 ntTSL 5 BASIC20.82■□□□□ 0.92
RFX4Q33E94 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
RFX4Q33E94 AL024507.2-201ENST00000606070 2574 ntBASIC20.82■□□□□ 0.92
RFX4Q33E94 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
RFX4Q33E94 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RFX4Q33E94 SSSCA1-AS1-201ENST00000567594 614 ntBASIC20.82■□□□□ 0.92
RFX4Q33E94 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RFX4Q33E94 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.82■□□□□ 0.92
RFX4Q33E94 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
RFX4Q33E94 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC20.82■□□□□ 0.92
RFX4Q33E94 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RFX4Q33E94 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
RFX4Q33E94 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.81■□□□□ 0.92
RFX4Q33E94 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RFX4Q33E94 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
RFX4Q33E94 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RFX4Q33E94 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RFX4Q33E94 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
RFX4Q33E94 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
RFX4Q33E94 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC20.81■□□□□ 0.92
RFX4Q33E94 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.81■□□□□ 0.92
RFX4Q33E94 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
RFX4Q33E94 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RFX4Q33E94 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
RFX4Q33E94 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RFX4Q33E94 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RFX4Q33E94 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
RFX4Q33E94 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.8■□□□□ 0.92
RFX4Q33E94 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RFX4Q33E94 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RFX4Q33E94 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
RFX4Q33E94 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.8■□□□□ 0.92
RFX4Q33E94 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
RFX4Q33E94 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC20.8■□□□□ 0.92
RFX4Q33E94 MIR6765-201ENST00000614092 87 ntBASIC20.8■□□□□ 0.92
RFX4Q33E94 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.8■□□□□ 0.92
RFX4Q33E94 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms