Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC14.23□□□□□ -0.13
HSPG2P98160 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC14.23□□□□□ -0.13
HSPG2P98160 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HSPG2P98160 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC14.23□□□□□ -0.13
HSPG2P98160 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC14.23□□□□□ -0.13
HSPG2P98160 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
HSPG2P98160 AC009086.3-201ENST00000623486 1008 ntBASIC14.23□□□□□ -0.13
HSPG2P98160 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC14.23□□□□□ -0.13
HSPG2P98160 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HSPG2P98160 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
HSPG2P98160 PRORSD1P-201ENST00000295112 541 ntBASIC14.22□□□□□ -0.13
HSPG2P98160 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HSPG2P98160 RPS2P52-201ENST00000469610 820 ntBASIC14.22□□□□□ -0.13
HSPG2P98160 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HSPG2P98160 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC14.22□□□□□ -0.13
HSPG2P98160 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HSPG2P98160 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC14.22□□□□□ -0.13
HSPG2P98160 AC139426.1-201ENST00000568218 2529 ntBASIC14.22□□□□□ -0.13
HSPG2P98160 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HSPG2P98160 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HSPG2P98160 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HSPG2P98160 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC14.22□□□□□ -0.13
HSPG2P98160 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC14.22□□□□□ -0.13
HSPG2P98160 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HSPG2P98160 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
HSPG2P98160 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC14.22□□□□□ -0.13
HSPG2P98160 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
HSPG2P98160 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HSPG2P98160 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HSPG2P98160 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC14.21□□□□□ -0.13
HSPG2P98160 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HSPG2P98160 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
HSPG2P98160 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HSPG2P98160 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
HSPG2P98160 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC14.21□□□□□ -0.13
HSPG2P98160 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
HSPG2P98160 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HSPG2P98160 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HSPG2P98160 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HSPG2P98160 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HSPG2P98160 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC14.2□□□□□ -0.14
HSPG2P98160 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
HSPG2P98160 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC14.2□□□□□ -0.14
HSPG2P98160 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HSPG2P98160 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HSPG2P98160 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC14.2□□□□□ -0.14
HSPG2P98160 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
HSPG2P98160 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC14.2□□□□□ -0.14
HSPG2P98160 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC14.2□□□□□ -0.14
HSPG2P98160 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC14.2□□□□□ -0.14
HSPG2P98160 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC14.2□□□□□ -0.14
HSPG2P98160 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HSPG2P98160 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HSPG2P98160 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HSPG2P98160 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HSPG2P98160 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HSPG2P98160 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HSPG2P98160 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
HSPG2P98160 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HSPG2P98160 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC14.19□□□□□ -0.14
HSPG2P98160 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC14.19□□□□□ -0.14
HSPG2P98160 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HSPG2P98160 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC14.19□□□□□ -0.14
HSPG2P98160 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC14.19□□□□□ -0.14
HSPG2P98160 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HSPG2P98160 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
HSPG2P98160 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC14.19□□□□□ -0.14
HSPG2P98160 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HSPG2P98160 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
HSPG2P98160 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC14.18□□□□□ -0.14
HSPG2P98160 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HSPG2P98160 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC14.18□□□□□ -0.14
HSPG2P98160 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC14.18□□□□□ -0.14
HSPG2P98160 METTL26-203ENST00000397664 604 ntTSL 2 BASIC14.18□□□□□ -0.14
HSPG2P98160 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC14.18□□□□□ -0.14
HSPG2P98160 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC14.18□□□□□ -0.14
HSPG2P98160 AC133637.1-201ENST00000624115 1537 ntBASIC14.18□□□□□ -0.14
HSPG2P98160 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
HSPG2P98160 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
HSPG2P98160 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
HSPG2P98160 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
HSPG2P98160 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
HSPG2P98160 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC14.18□□□□□ -0.14
HSPG2P98160 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HSPG2P98160 LINC02228-203ENST00000641970 1355 ntBASIC14.18□□□□□ -0.14
HSPG2P98160 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC14.18□□□□□ -0.14
HSPG2P98160 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC14.18□□□□□ -0.14
HSPG2P98160 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC14.18□□□□□ -0.14
HSPG2P98160 MFSD11-216ENST00000590393 1141 ntBASIC14.18□□□□□ -0.14
HSPG2P98160 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HSPG2P98160 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
HSPG2P98160 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HSPG2P98160 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HSPG2P98160 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC14.17□□□□□ -0.14
HSPG2P98160 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HSPG2P98160 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HSPG2P98160 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC14.17□□□□□ -0.14
HSPG2P98160 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HSPG2P98160 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
HSPG2P98160 USF2-207ENST00000595068 1612 ntTSL 5 BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms