Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.82■■□□□ 1.08
FOXA1P55317 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
FOXA1P55317 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
FOXA1P55317 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.82■■□□□ 1.08
FOXA1P55317 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
FOXA1P55317 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
FOXA1P55317 MIR4508-201ENST00000584178 70 ntBASIC21.82■■□□□ 1.08
FOXA1P55317 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
FOXA1P55317 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
FOXA1P55317 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
FOXA1P55317 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.81■■□□□ 1.08
FOXA1P55317 AC012354.3-201ENST00000623734 483 ntBASIC21.81■■□□□ 1.08
FOXA1P55317 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
FOXA1P55317 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
FOXA1P55317 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
FOXA1P55317 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
FOXA1P55317 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
FOXA1P55317 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
FOXA1P55317 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
FOXA1P55317 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
FOXA1P55317 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
FOXA1P55317 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC21.8■■□□□ 1.08
FOXA1P55317 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
FOXA1P55317 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
FOXA1P55317 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
FOXA1P55317 GUSBP5-202ENST00000510805 1989 ntBASIC21.79■■□□□ 1.08
FOXA1P55317 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
FOXA1P55317 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
FOXA1P55317 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC21.79■■□□□ 1.08
FOXA1P55317 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.79■■□□□ 1.08
FOXA1P55317 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
FOXA1P55317 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
FOXA1P55317 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.79■■□□□ 1.08
FOXA1P55317 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
FOXA1P55317 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
FOXA1P55317 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
FOXA1P55317 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
FOXA1P55317 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
FOXA1P55317 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
FOXA1P55317 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.78■■□□□ 1.08
FOXA1P55317 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC21.78■■□□□ 1.08
FOXA1P55317 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
FOXA1P55317 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
FOXA1P55317 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
FOXA1P55317 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
FOXA1P55317 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
FOXA1P55317 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
FOXA1P55317 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
FOXA1P55317 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.77■■□□□ 1.08
FOXA1P55317 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.77■■□□□ 1.08
FOXA1P55317 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC21.77■■□□□ 1.08
FOXA1P55317 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC21.77■■□□□ 1.08
FOXA1P55317 KRT8P33-201ENST00000508125 1423 ntBASIC21.77■■□□□ 1.08
FOXA1P55317 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
FOXA1P55317 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.77■■□□□ 1.07
FOXA1P55317 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
FOXA1P55317 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
FOXA1P55317 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
FOXA1P55317 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
FOXA1P55317 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.76■■□□□ 1.07
FOXA1P55317 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.76■■□□□ 1.07
FOXA1P55317 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
FOXA1P55317 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
FOXA1P55317 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
FOXA1P55317 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
FOXA1P55317 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.75■■□□□ 1.07
FOXA1P55317 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
FOXA1P55317 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
FOXA1P55317 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.75■■□□□ 1.07
FOXA1P55317 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.75■■□□□ 1.07
FOXA1P55317 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
FOXA1P55317 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC21.75■■□□□ 1.07
FOXA1P55317 AC103724.3-201ENST00000564481 992 ntBASIC21.75■■□□□ 1.07
FOXA1P55317 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
FOXA1P55317 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
FOXA1P55317 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
FOXA1P55317 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
FOXA1P55317 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
FOXA1P55317 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
FOXA1P55317 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
FOXA1P55317 AL353803.4-201ENST00000565882 1934 ntBASIC21.74■■□□□ 1.07
FOXA1P55317 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
FOXA1P55317 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
FOXA1P55317 LINC00565-201ENST00000562710 2331 ntBASIC21.74■■□□□ 1.07
FOXA1P55317 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
FOXA1P55317 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.74■■□□□ 1.07
FOXA1P55317 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
FOXA1P55317 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
FOXA1P55317 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
FOXA1P55317 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
FOXA1P55317 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.74■■□□□ 1.07
FOXA1P55317 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.74■■□□□ 1.07
FOXA1P55317 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.74■■□□□ 1.07
FOXA1P55317 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
FOXA1P55317 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
FOXA1P55317 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
FOXA1P55317 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
FOXA1P55317 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
FOXA1P55317 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
FOXA1P55317 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms