Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC26.3■■□□□ 1.8
CTCFP49711 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
CTCFP49711 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CTCFP49711 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CTCFP49711 LHPP-203ENST00000392757 840 ntTSL 3 BASIC26.3■■□□□ 1.8
CTCFP49711 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
CTCFP49711 TSPY6P-201ENST00000448518 926 ntBASIC26.3■■□□□ 1.8
CTCFP49711 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC26.3■■□□□ 1.8
CTCFP49711 RGMA-211ENST00000557420 989 ntTSL 3 BASIC26.3■■□□□ 1.8
CTCFP49711 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC26.3■■□□□ 1.8
CTCFP49711 TPRG1LP1-201ENST00000598702 760 ntBASIC26.3■■□□□ 1.8
CTCFP49711 AC011767.1-201ENST00000617410 1153 ntBASIC26.3■■□□□ 1.8
CTCFP49711 ITM2C-210ENST00000620962 501 ntBASIC26.3■■□□□ 1.8
CTCFP49711 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CTCFP49711 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
CTCFP49711 SHD-204ENST00000599689 1729 ntTSL 5 BASIC26.3■■□□□ 1.8
CTCFP49711 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
CTCFP49711 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
CTCFP49711 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CTCFP49711 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
CTCFP49711 AL121749.1-202ENST00000609313 2153 ntBASIC26.29■■□□□ 1.8
CTCFP49711 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
CTCFP49711 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CTCFP49711 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CTCFP49711 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC26.29■■□□□ 1.8
CTCFP49711 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC26.29■■□□□ 1.8
CTCFP49711 TBCB-214ENST00000629269 413 ntTSL 5 BASIC26.29■■□□□ 1.8
CTCFP49711 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC26.29■■□□□ 1.8
CTCFP49711 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CTCFP49711 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC26.28■■□□□ 1.8
CTCFP49711 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC26.28■■□□□ 1.8
CTCFP49711 KRT18P29-201ENST00000397031 1267 ntBASIC26.28■■□□□ 1.8
CTCFP49711 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC26.28■■□□□ 1.8
CTCFP49711 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC26.28■■□□□ 1.8
CTCFP49711 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC26.28■■□□□ 1.8
CTCFP49711 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC26.28■■□□□ 1.8
CTCFP49711 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CTCFP49711 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CTCFP49711 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CTCFP49711 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CTCFP49711 VGF-203ENST00000611537 1622 ntTSL 5 BASIC26.28■■□□□ 1.8
CTCFP49711 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CTCFP49711 AC135731.1-201ENST00000569415 2548 ntBASIC26.27■■□□□ 1.8
CTCFP49711 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
CTCFP49711 AC083906.2-201ENST00000511578 360 ntBASIC26.27■■□□□ 1.8
CTCFP49711 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC26.27■■□□□ 1.8
CTCFP49711 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC26.27■■□□□ 1.8
CTCFP49711 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CTCFP49711 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
CTCFP49711 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CTCFP49711 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
CTCFP49711 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC26.26■■□□□ 1.79
CTCFP49711 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC26.26■■□□□ 1.79
CTCFP49711 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC26.26■■□□□ 1.79
CTCFP49711 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC26.26■■□□□ 1.79
CTCFP49711 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CTCFP49711 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CTCFP49711 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CTCFP49711 COX20-201ENST00000366528 568 ntTSL 2 BASIC26.26■■□□□ 1.79
CTCFP49711 AC069152.1-201ENST00000438030 544 ntBASIC26.26■■□□□ 1.79
CTCFP49711 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC26.26■■□□□ 1.79
CTCFP49711 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC26.25■■□□□ 1.79
CTCFP49711 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CTCFP49711 POU5F1P3-201ENST00000428824 1078 ntBASIC26.25■■□□□ 1.79
CTCFP49711 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC26.25■■□□□ 1.79
CTCFP49711 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC26.25■■□□□ 1.79
CTCFP49711 AP006294.2-201ENST00000641667 209 ntBASIC26.25■■□□□ 1.79
CTCFP49711 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CTCFP49711 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC26.24■■□□□ 1.79
CTCFP49711 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC26.24■■□□□ 1.79
CTCFP49711 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
CTCFP49711 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
CTCFP49711 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC26.24■■□□□ 1.79
CTCFP49711 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC26.24■■□□□ 1.79
CTCFP49711 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
CTCFP49711 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CTCFP49711 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC26.23■■□□□ 1.79
CTCFP49711 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
CTCFP49711 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC26.23■■□□□ 1.79
CTCFP49711 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC26.23■■□□□ 1.79
CTCFP49711 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC26.23■■□□□ 1.79
CTCFP49711 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CTCFP49711 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
CTCFP49711 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC26.23■■□□□ 1.79
CTCFP49711 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC26.23■■□□□ 1.79
CTCFP49711 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CTCFP49711 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
CTCFP49711 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC26.22■■□□□ 1.79
CTCFP49711 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC26.22■■□□□ 1.79
CTCFP49711 KRT18P11-201ENST00000435214 1283 ntBASIC26.22■■□□□ 1.79
CTCFP49711 AL138781.1-201ENST00000566567 1274 ntBASIC26.22■■□□□ 1.79
CTCFP49711 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC26.22■■□□□ 1.79
CTCFP49711 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC26.22■■□□□ 1.79
CTCFP49711 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CTCFP49711 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CTCFP49711 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
CTCFP49711 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CTCFP49711 SMUG1P1-201ENST00000590640 811 ntBASIC26.21■■□□□ 1.79
CTCFP49711 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CTCFP49711 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms