Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SOX9P48436 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
SOX9P48436 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC23.09■■□□□ 1.29
SOX9P48436 DUX4L2-201ENST00000561772 1275 ntBASIC23.09■■□□□ 1.29
SOX9P48436 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC23.09■■□□□ 1.29
SOX9P48436 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC23.09■■□□□ 1.29
SOX9P48436 DUX4L6-201ENST00000626483 1275 ntBASIC23.09■■□□□ 1.29
SOX9P48436 DUX4L1-201ENST00000627662 1275 ntBASIC23.09■■□□□ 1.29
SOX9P48436 DUX4L8-201ENST00000629013 1275 ntBASIC23.09■■□□□ 1.29
SOX9P48436 DUX4L3-201ENST00000630187 1275 ntBASIC23.09■■□□□ 1.29
SOX9P48436 DUX4L7-201ENST00000630678 1275 ntBASIC23.09■■□□□ 1.29
SOX9P48436 DUX4L5-201ENST00000630834 1275 ntBASIC23.09■■□□□ 1.29
SOX9P48436 RARRES2P11-201ENST00000635158 484 ntBASIC23.09■■□□□ 1.29
SOX9P48436 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
SOX9P48436 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC23.09■■□□□ 1.29
SOX9P48436 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC23.09■■□□□ 1.29
SOX9P48436 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
SOX9P48436 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
SOX9P48436 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
SOX9P48436 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC23.08■■□□□ 1.29
SOX9P48436 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
SOX9P48436 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC23.08■■□□□ 1.29
SOX9P48436 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC23.08■■□□□ 1.29
SOX9P48436 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
SOX9P48436 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
SOX9P48436 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC23.08■■□□□ 1.29
SOX9P48436 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
SOX9P48436 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
SOX9P48436 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.29
SOX9P48436 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SOX9P48436 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
SOX9P48436 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC23.07■■□□□ 1.28
SOX9P48436 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC23.07■■□□□ 1.28
SOX9P48436 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SOX9P48436 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SOX9P48436 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SOX9P48436 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC23.07■■□□□ 1.28
SOX9P48436 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC23.07■■□□□ 1.28
SOX9P48436 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC23.07■■□□□ 1.28
SOX9P48436 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC23.07■■□□□ 1.28
SOX9P48436 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC23.06■■□□□ 1.28
SOX9P48436 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC23.06■■□□□ 1.28
SOX9P48436 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
SOX9P48436 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SOX9P48436 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SOX9P48436 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC23.06■■□□□ 1.28
SOX9P48436 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC23.06■■□□□ 1.28
SOX9P48436 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC23.06■■□□□ 1.28
SOX9P48436 RAB43-208ENST00000615093 783 ntTSL 5 BASIC23.06■■□□□ 1.28
SOX9P48436 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
SOX9P48436 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
SOX9P48436 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
SOX9P48436 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC23.06■■□□□ 1.28
SOX9P48436 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
SOX9P48436 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SOX9P48436 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
SOX9P48436 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC23.05■■□□□ 1.28
SOX9P48436 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
SOX9P48436 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
SOX9P48436 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SOX9P48436 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC23.05■■□□□ 1.28
SOX9P48436 AC092437.1-201ENST00000624794 1048 ntBASIC23.05■■□□□ 1.28
SOX9P48436 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
SOX9P48436 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
SOX9P48436 TMEM202-AS1-202ENST00000565181 2325 ntBASIC23.04■■□□□ 1.28
SOX9P48436 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
SOX9P48436 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC23.04■■□□□ 1.28
SOX9P48436 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC23.04■■□□□ 1.28
SOX9P48436 IGHV3-19-201ENST00000521488 291 ntBASIC23.04■■□□□ 1.28
SOX9P48436 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC23.04■■□□□ 1.28
SOX9P48436 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SOX9P48436 AICDA-202ENST00000537228 667 ntTSL 5 BASIC23.04■■□□□ 1.28
SOX9P48436 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SOX9P48436 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
SOX9P48436 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SOX9P48436 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SOX9P48436 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SOX9P48436 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
SOX9P48436 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SOX9P48436 AL137784.2-201ENST00000607332 1000 ntBASIC23.03■■□□□ 1.28
SOX9P48436 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SOX9P48436 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC23.03■■□□□ 1.28
SOX9P48436 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SOX9P48436 AC133637.1-201ENST00000624115 1537 ntBASIC23.03■■□□□ 1.28
SOX9P48436 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SOX9P48436 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
SOX9P48436 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SOX9P48436 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SOX9P48436 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC23.02■■□□□ 1.28
SOX9P48436 AC010525.1-201ENST00000585559 441 ntBASIC23.02■■□□□ 1.28
SOX9P48436 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC23.02■■□□□ 1.28
SOX9P48436 SHF-207ENST00000560540 2062 ntTSL 5 BASIC23.02■■□□□ 1.28
SOX9P48436 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC23.01■■□□□ 1.27
SOX9P48436 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
SOX9P48436 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC23.01■■□□□ 1.27
SOX9P48436 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SOX9P48436 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC23.01■■□□□ 1.27
SOX9P48436 AC027612.3-201ENST00000413684 1047 ntBASIC23.01■■□□□ 1.27
SOX9P48436 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC23.01■■□□□ 1.27
SOX9P48436 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC23.01■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms