Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.54■□□□□ 0.88
RFC3P40938 AC105265.2-201ENST00000467189 838 ntBASIC20.54■□□□□ 0.88
RFC3P40938 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.54■□□□□ 0.88
RFC3P40938 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
RFC3P40938 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC20.54■□□□□ 0.88
RFC3P40938 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.54■□□□□ 0.88
RFC3P40938 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFC3P40938 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFC3P40938 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFC3P40938 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
RFC3P40938 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFC3P40938 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.53■□□□□ 0.88
RFC3P40938 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFC3P40938 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFC3P40938 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFC3P40938 AC241377.3-202ENST00000626088 1088 ntBASIC20.53■□□□□ 0.88
RFC3P40938 AC241585.3-202ENST00000628937 1088 ntBASIC20.53■□□□□ 0.88
RFC3P40938 AC245100.8-202ENST00000629247 1058 ntBASIC20.53■□□□□ 0.88
RFC3P40938 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
RFC3P40938 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RFC3P40938 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC20.53■□□□□ 0.88
RFC3P40938 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RFC3P40938 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RFC3P40938 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFC3P40938 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RFC3P40938 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFC3P40938 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
RFC3P40938 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFC3P40938 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RFC3P40938 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RFC3P40938 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RFC3P40938 MIR939-201ENST00000401314 82 ntBASIC20.52■□□□□ 0.88
RFC3P40938 AC008764.7-201ENST00000593779 1081 ntBASIC20.52■□□□□ 0.88
RFC3P40938 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.52■□□□□ 0.88
RFC3P40938 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.87
RFC3P40938 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.52■□□□□ 0.87
RFC3P40938 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFC3P40938 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFC3P40938 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFC3P40938 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFC3P40938 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFC3P40938 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFC3P40938 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFC3P40938 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RFC3P40938 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.51■□□□□ 0.87
RFC3P40938 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RFC3P40938 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.51■□□□□ 0.87
RFC3P40938 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.51■□□□□ 0.87
RFC3P40938 MIR3181-201ENST00000578512 73 ntBASIC20.51■□□□□ 0.87
RFC3P40938 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RFC3P40938 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC20.51■□□□□ 0.87
RFC3P40938 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RFC3P40938 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RFC3P40938 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RFC3P40938 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RFC3P40938 LINC01124-201ENST00000409786 2117 ntBASIC20.51■□□□□ 0.87
RFC3P40938 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC20.51■□□□□ 0.87
RFC3P40938 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.51■□□□□ 0.87
RFC3P40938 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
RFC3P40938 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RFC3P40938 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RFC3P40938 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.5■□□□□ 0.87
RFC3P40938 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
RFC3P40938 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.5■□□□□ 0.87
RFC3P40938 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.5■□□□□ 0.87
RFC3P40938 AC011298.3-201ENST00000615796 283 ntBASIC20.5■□□□□ 0.87
RFC3P40938 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RFC3P40938 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
RFC3P40938 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RFC3P40938 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RFC3P40938 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
RFC3P40938 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RFC3P40938 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.49■□□□□ 0.87
RFC3P40938 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RFC3P40938 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.49■□□□□ 0.87
RFC3P40938 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.49■□□□□ 0.87
RFC3P40938 EED-207ENST00000528180 1745 ntTSL 5 BASIC20.49■□□□□ 0.87
RFC3P40938 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RFC3P40938 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RFC3P40938 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RFC3P40938 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RFC3P40938 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
RFC3P40938 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
RFC3P40938 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
RFC3P40938 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RFC3P40938 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RFC3P40938 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RFC3P40938 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.48■□□□□ 0.87
RFC3P40938 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
RFC3P40938 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.48■□□□□ 0.87
RFC3P40938 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.48■□□□□ 0.87
RFC3P40938 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
RFC3P40938 pRNA.6-201ENST00000610482 90 ntBASIC20.48■□□□□ 0.87
RFC3P40938 pRNA.5-201ENST00000612139 90 ntBASIC20.48■□□□□ 0.87
RFC3P40938 pRNA.11-201ENST00000618423 90 ntBASIC20.48■□□□□ 0.87
RFC3P40938 pRNA.13-201ENST00000619112 90 ntBASIC20.48■□□□□ 0.87
RFC3P40938 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.48■□□□□ 0.87
RFC3P40938 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RFC3P40938 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.48■□□□□ 0.87
RFC3P40938 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms