Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HLA-DMBP28068 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
HLA-DMBP28068 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HLA-DMBP28068 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HLA-DMBP28068 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
HLA-DMBP28068 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HLA-DMBP28068 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC17.08■□□□□ 0.32
HLA-DMBP28068 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC17.08■□□□□ 0.32
HLA-DMBP28068 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
HLA-DMBP28068 THA1P-201ENST00000590384 1145 ntBASIC17.08■□□□□ 0.32
HLA-DMBP28068 AL035685.1-201ENST00000636663 812 ntBASIC17.08■□□□□ 0.32
HLA-DMBP28068 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HLA-DMBP28068 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HLA-DMBP28068 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HLA-DMBP28068 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HLA-DMBP28068 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HLA-DMBP28068 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HLA-DMBP28068 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HLA-DMBP28068 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HLA-DMBP28068 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HLA-DMBP28068 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC17.07■□□□□ 0.32
HLA-DMBP28068 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HLA-DMBP28068 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
HLA-DMBP28068 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC17.07■□□□□ 0.32
HLA-DMBP28068 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC17.07■□□□□ 0.32
HLA-DMBP28068 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HLA-DMBP28068 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
HLA-DMBP28068 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HLA-DMBP28068 AL117328.2-201ENST00000624617 1940 ntBASIC17.07■□□□□ 0.32
HLA-DMBP28068 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HLA-DMBP28068 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HLA-DMBP28068 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
HLA-DMBP28068 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
HLA-DMBP28068 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HLA-DMBP28068 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HLA-DMBP28068 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HLA-DMBP28068 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HLA-DMBP28068 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HLA-DMBP28068 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC17.06■□□□□ 0.32
HLA-DMBP28068 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HLA-DMBP28068 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HLA-DMBP28068 COMT-203ENST00000403184 2217 ntTSL 2 BASIC17.06■□□□□ 0.32
HLA-DMBP28068 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HLA-DMBP28068 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HLA-DMBP28068 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC17.06■□□□□ 0.32
HLA-DMBP28068 EP400NL-214ENST00000641289 2402 ntBASIC17.06■□□□□ 0.32
HLA-DMBP28068 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
HLA-DMBP28068 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HLA-DMBP28068 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HLA-DMBP28068 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HLA-DMBP28068 KRT18P24-201ENST00000344739 1156 ntBASIC17.05■□□□□ 0.32
HLA-DMBP28068 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HLA-DMBP28068 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC17.05■□□□□ 0.32
HLA-DMBP28068 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HLA-DMBP28068 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC17.05■□□□□ 0.32
HLA-DMBP28068 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HLA-DMBP28068 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HLA-DMBP28068 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HLA-DMBP28068 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
HLA-DMBP28068 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
HLA-DMBP28068 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HLA-DMBP28068 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC17.04■□□□□ 0.32
HLA-DMBP28068 AL031848.2-201ENST00000607670 837 ntBASIC17.04■□□□□ 0.32
HLA-DMBP28068 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
HLA-DMBP28068 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
HLA-DMBP28068 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC17.04■□□□□ 0.32
HLA-DMBP28068 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC17.04■□□□□ 0.32
HLA-DMBP28068 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
HLA-DMBP28068 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
HLA-DMBP28068 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
HLA-DMBP28068 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC17.03■□□□□ 0.32
HLA-DMBP28068 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC17.03■□□□□ 0.32
HLA-DMBP28068 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HLA-DMBP28068 AC079630.1-202ENST00000618127 1840 ntBASIC17.03■□□□□ 0.32
HLA-DMBP28068 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HLA-DMBP28068 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC17.03■□□□□ 0.32
HLA-DMBP28068 STK25-234ENST00000535007 2459 ntTSL 2 BASIC17.03■□□□□ 0.32
HLA-DMBP28068 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HLA-DMBP28068 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HLA-DMBP28068 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
HLA-DMBP28068 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC17.03■□□□□ 0.32
HLA-DMBP28068 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
HLA-DMBP28068 AC103724.3-201ENST00000564481 992 ntBASIC17.03■□□□□ 0.32
HLA-DMBP28068 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC17.03■□□□□ 0.32
HLA-DMBP28068 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
HLA-DMBP28068 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC17.03■□□□□ 0.32
HLA-DMBP28068 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC17.03■□□□□ 0.32
HLA-DMBP28068 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
HLA-DMBP28068 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
HLA-DMBP28068 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
HLA-DMBP28068 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
HLA-DMBP28068 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HLA-DMBP28068 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC17.02■□□□□ 0.32
HLA-DMBP28068 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HLA-DMBP28068 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
HLA-DMBP28068 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HLA-DMBP28068 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
HLA-DMBP28068 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC17.02■□□□□ 0.32
HLA-DMBP28068 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
HLA-DMBP28068 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms