Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC30.07■■■□□ 2.4
COL3A1P02461 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC30.07■■■□□ 2.4
COL3A1P02461 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC30.06■■■□□ 2.4
COL3A1P02461 AP001330.3-201ENST00000520123 633 ntBASIC30.06■■■□□ 2.4
COL3A1P02461 MIR4767-201ENST00000582827 78 ntBASIC30.06■■■□□ 2.4
COL3A1P02461 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC30.06■■■□□ 2.4
COL3A1P02461 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
COL3A1P02461 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
COL3A1P02461 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC30.06■■■□□ 2.4
COL3A1P02461 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
COL3A1P02461 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC30.06■■■□□ 2.4
COL3A1P02461 AC079630.1-202ENST00000618127 1840 ntBASIC30.06■■■□□ 2.4
COL3A1P02461 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC30.06■■■□□ 2.4
COL3A1P02461 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
COL3A1P02461 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
COL3A1P02461 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
COL3A1P02461 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
COL3A1P02461 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
COL3A1P02461 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC30.05■■■□□ 2.4
COL3A1P02461 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC30.05■■■□□ 2.4
COL3A1P02461 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC30.05■■■□□ 2.4
COL3A1P02461 DUX4L19-201ENST00000557448 1267 ntBASIC30.05■■■□□ 2.4
COL3A1P02461 AL138724.1-201ENST00000606771 1088 ntBASIC30.05■■■□□ 2.4
COL3A1P02461 AC136469.2-201ENST00000623944 1028 ntBASIC30.05■■■□□ 2.4
COL3A1P02461 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
COL3A1P02461 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC30.04■■■□□ 2.4
COL3A1P02461 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC30.04■■■□□ 2.4
COL3A1P02461 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC30.04■■■□□ 2.4
COL3A1P02461 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC30.04■■■□□ 2.4
COL3A1P02461 MIR3181-201ENST00000578512 73 ntBASIC30.04■■■□□ 2.4
COL3A1P02461 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
COL3A1P02461 SYT6-210ENST00000641643 1587 ntBASIC30.03■■■□□ 2.4
COL3A1P02461 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
COL3A1P02461 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC30.03■■■□□ 2.4
COL3A1P02461 AC144652.1-201ENST00000609974 1624 ntBASIC30.03■■■□□ 2.4
COL3A1P02461 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
COL3A1P02461 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC30.03■■■□□ 2.4
COL3A1P02461 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC30.03■■■□□ 2.4
COL3A1P02461 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC30.03■■■□□ 2.4
COL3A1P02461 AC093323.1-202ENST00000635031 2045 ntBASIC30.03■■■□□ 2.4
COL3A1P02461 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
COL3A1P02461 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC30.02■■■□□ 2.4
COL3A1P02461 PBX2P1-201ENST00000493219 1291 ntBASIC30.02■■■□□ 2.4
COL3A1P02461 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC30.02■■■□□ 2.4
COL3A1P02461 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
COL3A1P02461 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC30.02■■■□□ 2.4
COL3A1P02461 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC30.02■■■□□ 2.4
COL3A1P02461 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC30.01■■■□□ 2.4
COL3A1P02461 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
COL3A1P02461 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC30.01■■■□□ 2.4
COL3A1P02461 AC092171.4-201ENST00000609130 632 ntBASIC30.01■■■□□ 2.4
COL3A1P02461 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC30.01■■■□□ 2.39
COL3A1P02461 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
COL3A1P02461 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC30■■■□□ 2.39
COL3A1P02461 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
COL3A1P02461 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC30■■■□□ 2.39
COL3A1P02461 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC30■■■□□ 2.39
COL3A1P02461 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC30■■■□□ 2.39
COL3A1P02461 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC30■■■□□ 2.39
COL3A1P02461 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
COL3A1P02461 MIR939-201ENST00000401314 82 ntBASIC29.99■■■□□ 2.39
COL3A1P02461 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC29.99■■■□□ 2.39
COL3A1P02461 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
COL3A1P02461 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC29.99■■■□□ 2.39
COL3A1P02461 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
COL3A1P02461 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC29.99■■■□□ 2.39
COL3A1P02461 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC29.99■■■□□ 2.39
COL3A1P02461 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
COL3A1P02461 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC29.98■■■□□ 2.39
COL3A1P02461 EDA-201ENST00000338901 1233 ntBASIC29.98■■■□□ 2.39
COL3A1P02461 SNX3-202ENST00000349379 890 ntTSL 2 BASIC29.98■■■□□ 2.39
COL3A1P02461 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC29.98■■■□□ 2.39
COL3A1P02461 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC29.98■■■□□ 2.39
COL3A1P02461 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC29.98■■■□□ 2.39
COL3A1P02461 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC29.97■■■□□ 2.39
COL3A1P02461 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
COL3A1P02461 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
COL3A1P02461 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC29.97■■■□□ 2.39
COL3A1P02461 AL499627.2-201ENST00000606283 725 ntBASIC29.97■■■□□ 2.39
COL3A1P02461 AC005837.3-201ENST00000612163 286 ntBASIC29.97■■■□□ 2.39
COL3A1P02461 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
COL3A1P02461 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
COL3A1P02461 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
COL3A1P02461 AF213884.3-201ENST00000563833 479 ntBASIC29.96■■■□□ 2.39
COL3A1P02461 DUX4L4-201ENST00000566884 1269 ntBASIC29.96■■■□□ 2.39
COL3A1P02461 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC29.96■■■□□ 2.39
COL3A1P02461 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC29.96■■■□□ 2.39
COL3A1P02461 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
COL3A1P02461 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC29.95■■■□□ 2.39
COL3A1P02461 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
COL3A1P02461 pRNA.6-201ENST00000610482 90 ntBASIC29.95■■■□□ 2.39
COL3A1P02461 pRNA.5-201ENST00000612139 90 ntBASIC29.95■■■□□ 2.39
COL3A1P02461 pRNA.11-201ENST00000618423 90 ntBASIC29.95■■■□□ 2.39
COL3A1P02461 pRNA.13-201ENST00000619112 90 ntBASIC29.95■■■□□ 2.39
COL3A1P02461 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC29.95■■■□□ 2.39
COL3A1P02461 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC29.95■■■□□ 2.39
COL3A1P02461 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC29.95■■■□□ 2.38
COL3A1P02461 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC29.94■■■□□ 2.38
COL3A1P02461 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
COL3A1P02461 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC29.94■■■□□ 2.38
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms