Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
CDKL5O76039 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC26.19■■□□□ 1.78
CDKL5O76039 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
CDKL5O76039 AC079630.1-202ENST00000618127 1840 ntBASIC26.18■■□□□ 1.78
CDKL5O76039 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC26.18■■□□□ 1.78
CDKL5O76039 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CDKL5O76039 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
CDKL5O76039 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC26.18■■□□□ 1.78
CDKL5O76039 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
CDKL5O76039 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC26.18■■□□□ 1.78
CDKL5O76039 TFPT-201ENST00000391757 774 ntTSL 5 BASIC26.17■■□□□ 1.78
CDKL5O76039 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
CDKL5O76039 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
CDKL5O76039 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC26.17■■□□□ 1.78
CDKL5O76039 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC26.17■■□□□ 1.78
CDKL5O76039 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
CDKL5O76039 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC26.17■■□□□ 1.78
CDKL5O76039 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
CDKL5O76039 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC26.16■■□□□ 1.78
CDKL5O76039 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC26.16■■□□□ 1.78
CDKL5O76039 UNC93B8-201ENST00000511903 705 ntBASIC26.16■■□□□ 1.78
CDKL5O76039 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
CDKL5O76039 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
CDKL5O76039 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC26.16■■□□□ 1.78
CDKL5O76039 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
CDKL5O76039 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
CDKL5O76039 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC26.15■■□□□ 1.78
CDKL5O76039 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CDKL5O76039 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC26.15■■□□□ 1.78
CDKL5O76039 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC26.15■■□□□ 1.78
CDKL5O76039 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CDKL5O76039 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CDKL5O76039 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CDKL5O76039 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC26.15■■□□□ 1.78
CDKL5O76039 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
CDKL5O76039 LSM4-201ENST00000252816 986 ntTSL 2 BASIC26.14■■□□□ 1.78
CDKL5O76039 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC26.14■■□□□ 1.78
CDKL5O76039 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC26.14■■□□□ 1.78
CDKL5O76039 TRIR-205ENST00000592273 783 ntTSL 3 BASIC26.14■■□□□ 1.78
CDKL5O76039 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC26.14■■□□□ 1.78
CDKL5O76039 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC26.14■■□□□ 1.77
CDKL5O76039 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.77
CDKL5O76039 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.77
CDKL5O76039 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC26.14■■□□□ 1.77
CDKL5O76039 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC26.14■■□□□ 1.77
CDKL5O76039 LTK-203ENST00000453182 2412 ntTSL 2 BASIC26.13■■□□□ 1.77
CDKL5O76039 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC26.13■■□□□ 1.77
CDKL5O76039 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
CDKL5O76039 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
CDKL5O76039 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
CDKL5O76039 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC26.12■■□□□ 1.77
CDKL5O76039 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC26.12■■□□□ 1.77
CDKL5O76039 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC26.12■■□□□ 1.77
CDKL5O76039 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC26.12■■□□□ 1.77
CDKL5O76039 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
CDKL5O76039 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC26.12■■□□□ 1.77
CDKL5O76039 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
CDKL5O76039 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
CDKL5O76039 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC26.11■■□□□ 1.77
CDKL5O76039 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
CDKL5O76039 MIR6724-1-201ENST00000616420 92 ntBASIC26.11■■□□□ 1.77
CDKL5O76039 MIR6724-2-201ENST00000616483 92 ntBASIC26.11■■□□□ 1.77
CDKL5O76039 MIR6724-4-201ENST00000617390 92 ntBASIC26.11■■□□□ 1.77
CDKL5O76039 MIR6724-3-201ENST00000622482 92 ntBASIC26.11■■□□□ 1.77
CDKL5O76039 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC26.11■■□□□ 1.77
CDKL5O76039 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC26.11■■□□□ 1.77
CDKL5O76039 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CDKL5O76039 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC26.1■■□□□ 1.77
CDKL5O76039 AC144652.1-201ENST00000609974 1624 ntBASIC26.1■■□□□ 1.77
CDKL5O76039 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
CDKL5O76039 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
CDKL5O76039 GUSBP5-201ENST00000418136 578 ntBASIC26.1■■□□□ 1.77
CDKL5O76039 KRT16P3-201ENST00000439127 1283 ntBASIC26.1■■□□□ 1.77
CDKL5O76039 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC26.1■■□□□ 1.77
CDKL5O76039 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC26.1■■□□□ 1.77
CDKL5O76039 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC26.1■■□□□ 1.77
CDKL5O76039 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
CDKL5O76039 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
CDKL5O76039 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC26.09■■□□□ 1.77
CDKL5O76039 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC26.09■■□□□ 1.77
CDKL5O76039 AC068473.5-201ENST00000616428 2072 ntBASIC26.09■■□□□ 1.77
CDKL5O76039 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
CDKL5O76039 ME2-208ENST00000638937 2471 ntTSL 5 BASIC26.09■■□□□ 1.77
CDKL5O76039 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
CDKL5O76039 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC26.08■■□□□ 1.77
CDKL5O76039 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC26.08■■□□□ 1.77
CDKL5O76039 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC26.08■■□□□ 1.77
CDKL5O76039 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
CDKL5O76039 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC26.08■■□□□ 1.77
CDKL5O76039 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC26.08■■□□□ 1.77
CDKL5O76039 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
CDKL5O76039 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC26.08■■□□□ 1.76
CDKL5O76039 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
CDKL5O76039 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC26.07■■□□□ 1.76
CDKL5O76039 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC26.07■■□□□ 1.76
CDKL5O76039 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
CDKL5O76039 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC26.07■■□□□ 1.76
CDKL5O76039 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC26.07■■□□□ 1.76
CDKL5O76039 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC26.07■■□□□ 1.76
CDKL5O76039 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms