Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC22■■□□□ 1.11
VPS4BO75351 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
VPS4BO75351 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
VPS4BO75351 NALT1-201ENST00000429224 738 ntTSL 5 BASIC21.99■■□□□ 1.11
VPS4BO75351 UNC93B8-201ENST00000511903 705 ntBASIC21.99■■□□□ 1.11
VPS4BO75351 AC011551.1-201ENST00000614101 683 ntBASIC21.99■■□□□ 1.11
VPS4BO75351 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.99■■□□□ 1.11
VPS4BO75351 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.99■■□□□ 1.11
VPS4BO75351 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
VPS4BO75351 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
VPS4BO75351 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
VPS4BO75351 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
VPS4BO75351 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.99■■□□□ 1.11
VPS4BO75351 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
VPS4BO75351 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
VPS4BO75351 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.98■■□□□ 1.11
VPS4BO75351 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.98■■□□□ 1.11
VPS4BO75351 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
VPS4BO75351 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
VPS4BO75351 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
VPS4BO75351 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
VPS4BO75351 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
VPS4BO75351 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.98■■□□□ 1.11
VPS4BO75351 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
VPS4BO75351 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
VPS4BO75351 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.97■■□□□ 1.11
VPS4BO75351 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
VPS4BO75351 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.97■■□□□ 1.11
VPS4BO75351 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
VPS4BO75351 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
VPS4BO75351 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.97■■□□□ 1.11
VPS4BO75351 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
VPS4BO75351 AC233723.2-201ENST00000623798 2106 ntBASIC21.97■■□□□ 1.11
VPS4BO75351 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
VPS4BO75351 AC022616.5-201ENST00000518796 181 ntBASIC21.96■■□□□ 1.11
VPS4BO75351 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.96■■□□□ 1.11
VPS4BO75351 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.96■■□□□ 1.11
VPS4BO75351 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.96■■□□□ 1.11
VPS4BO75351 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
VPS4BO75351 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.96■■□□□ 1.11
VPS4BO75351 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
VPS4BO75351 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
VPS4BO75351 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
VPS4BO75351 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
VPS4BO75351 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC21.95■■□□□ 1.1
VPS4BO75351 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.95■■□□□ 1.1
VPS4BO75351 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
VPS4BO75351 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.1
VPS4BO75351 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
VPS4BO75351 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
VPS4BO75351 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
VPS4BO75351 TSPY9P-201ENST00000440215 945 ntBASIC21.94■■□□□ 1.1
VPS4BO75351 TSPY11P-201ENST00000442607 1045 ntBASIC21.94■■□□□ 1.1
VPS4BO75351 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC21.94■■□□□ 1.1
VPS4BO75351 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
VPS4BO75351 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.94■■□□□ 1.1
VPS4BO75351 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
VPS4BO75351 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
VPS4BO75351 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
VPS4BO75351 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VPS4BO75351 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
VPS4BO75351 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VPS4BO75351 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
VPS4BO75351 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VPS4BO75351 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
VPS4BO75351 ALDH1A3-203ENST00000557963 1670 ntBASIC21.93■■□□□ 1.1
VPS4BO75351 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
VPS4BO75351 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
VPS4BO75351 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS4BO75351 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS4BO75351 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS4BO75351 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.92■■□□□ 1.1
VPS4BO75351 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS4BO75351 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS4BO75351 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC21.92■■□□□ 1.1
VPS4BO75351 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS4BO75351 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
VPS4BO75351 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
VPS4BO75351 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.92■■□□□ 1.1
VPS4BO75351 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.91■■□□□ 1.1
VPS4BO75351 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
VPS4BO75351 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
VPS4BO75351 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
VPS4BO75351 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
VPS4BO75351 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC21.91■■□□□ 1.1
VPS4BO75351 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC21.91■■□□□ 1.1
VPS4BO75351 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.91■■□□□ 1.1
VPS4BO75351 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
VPS4BO75351 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
VPS4BO75351 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
VPS4BO75351 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC21.91■■□□□ 1.1
VPS4BO75351 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
VPS4BO75351 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
VPS4BO75351 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.91■■□□□ 1.1
VPS4BO75351 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
VPS4BO75351 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.9■■□□□ 1.1
VPS4BO75351 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
VPS4BO75351 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
VPS4BO75351 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.9■■□□□ 1.1
VPS4BO75351 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms