Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
XRCC3O43542 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
XRCC3O43542 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
XRCC3O43542 ALDH1A3-203ENST00000557963 1670 ntBASIC19.27■□□□□ 0.68
XRCC3O43542 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
XRCC3O43542 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
XRCC3O43542 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
XRCC3O43542 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
XRCC3O43542 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC19.27■□□□□ 0.68
XRCC3O43542 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
XRCC3O43542 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC19.27■□□□□ 0.68
XRCC3O43542 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC19.27■□□□□ 0.68
XRCC3O43542 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.27■□□□□ 0.68
XRCC3O43542 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
XRCC3O43542 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.67
XRCC3O43542 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
XRCC3O43542 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
XRCC3O43542 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
XRCC3O43542 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
XRCC3O43542 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC19.26■□□□□ 0.67
XRCC3O43542 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
XRCC3O43542 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
XRCC3O43542 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
XRCC3O43542 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC19.26■□□□□ 0.67
XRCC3O43542 ABHD17AP4-201ENST00000411545 909 ntBASIC19.26■□□□□ 0.67
XRCC3O43542 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC19.26■□□□□ 0.67
XRCC3O43542 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
XRCC3O43542 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
XRCC3O43542 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
XRCC3O43542 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
XRCC3O43542 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
XRCC3O43542 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
XRCC3O43542 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.25■□□□□ 0.67
XRCC3O43542 AL137060.1-201ENST00000618151 2648 ntBASIC19.25■□□□□ 0.67
XRCC3O43542 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
XRCC3O43542 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
XRCC3O43542 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
XRCC3O43542 AC092053.2-201ENST00000640557 1818 ntBASIC19.25■□□□□ 0.67
XRCC3O43542 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
XRCC3O43542 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
XRCC3O43542 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.24■□□□□ 0.67
XRCC3O43542 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
XRCC3O43542 C11orf96-202ENST00000528572 1834 ntBASIC19.24■□□□□ 0.67
XRCC3O43542 AL592295.1-201ENST00000400984 884 ntBASIC19.24■□□□□ 0.67
XRCC3O43542 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
XRCC3O43542 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
XRCC3O43542 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
XRCC3O43542 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
XRCC3O43542 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
XRCC3O43542 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
XRCC3O43542 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
XRCC3O43542 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
XRCC3O43542 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.23■□□□□ 0.67
XRCC3O43542 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
XRCC3O43542 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
XRCC3O43542 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
XRCC3O43542 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
XRCC3O43542 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
XRCC3O43542 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC19.23■□□□□ 0.67
XRCC3O43542 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC19.23■□□□□ 0.67
XRCC3O43542 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC19.23■□□□□ 0.67
XRCC3O43542 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
XRCC3O43542 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
XRCC3O43542 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.23■□□□□ 0.67
XRCC3O43542 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
XRCC3O43542 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
XRCC3O43542 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
XRCC3O43542 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
XRCC3O43542 AC139530.1-201ENST00000575312 1977 ntBASIC19.23■□□□□ 0.67
XRCC3O43542 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
XRCC3O43542 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
XRCC3O43542 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
XRCC3O43542 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
XRCC3O43542 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
XRCC3O43542 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
XRCC3O43542 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
XRCC3O43542 RPS2P7-201ENST00000447334 885 ntBASIC19.22■□□□□ 0.67
XRCC3O43542 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC19.22■□□□□ 0.67
XRCC3O43542 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
XRCC3O43542 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
XRCC3O43542 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
XRCC3O43542 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
XRCC3O43542 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
XRCC3O43542 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
XRCC3O43542 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.21■□□□□ 0.67
XRCC3O43542 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
XRCC3O43542 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
XRCC3O43542 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.21■□□□□ 0.67
XRCC3O43542 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
XRCC3O43542 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
XRCC3O43542 HES4-204ENST00000484667 667 ntTSL 3 BASIC19.21■□□□□ 0.67
XRCC3O43542 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
XRCC3O43542 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
XRCC3O43542 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
XRCC3O43542 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
XRCC3O43542 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
XRCC3O43542 PKD1P6-201ENST00000343738 4769 ntBASIC19.21■□□□□ 0.67
XRCC3O43542 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
XRCC3O43542 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.2■□□□□ 0.66
XRCC3O43542 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms