Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGN4O00479 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGN4O00479 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGN4O00479 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HMGN4O00479 REST-206ENST00000612429 1376 ntTSL 5 BASIC20.97■□□□□ 0.95
HMGN4O00479 REST-207ENST00000616975 1370 ntTSL 5 BASIC20.97■□□□□ 0.95
HMGN4O00479 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HMGN4O00479 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGN4O00479 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
HMGN4O00479 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
HMGN4O00479 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGN4O00479 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
HMGN4O00479 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HMGN4O00479 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.96■□□□□ 0.95
HMGN4O00479 AC233723.2-201ENST00000623798 2106 ntBASIC20.96■□□□□ 0.95
HMGN4O00479 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGN4O00479 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HMGN4O00479 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.96■□□□□ 0.95
HMGN4O00479 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGN4O00479 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC20.96■□□□□ 0.95
HMGN4O00479 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGN4O00479 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGN4O00479 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC20.96■□□□□ 0.95
HMGN4O00479 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.96■□□□□ 0.95
HMGN4O00479 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
HMGN4O00479 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
HMGN4O00479 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
HMGN4O00479 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HMGN4O00479 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.95■□□□□ 0.94
HMGN4O00479 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
HMGN4O00479 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
HMGN4O00479 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HMGN4O00479 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.95■□□□□ 0.94
HMGN4O00479 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HMGN4O00479 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HMGN4O00479 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HMGN4O00479 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.94■□□□□ 0.94
HMGN4O00479 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGN4O00479 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HMGN4O00479 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
HMGN4O00479 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGN4O00479 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGN4O00479 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGN4O00479 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGN4O00479 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.94■□□□□ 0.94
HMGN4O00479 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.94■□□□□ 0.94
HMGN4O00479 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC20.94■□□□□ 0.94
HMGN4O00479 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HMGN4O00479 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HMGN4O00479 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HMGN4O00479 AC021242.3-201ENST00000607598 1377 ntBASIC20.94■□□□□ 0.94
HMGN4O00479 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
HMGN4O00479 AC079834.2-201ENST00000609776 1949 ntBASIC20.94■□□□□ 0.94
HMGN4O00479 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.93■□□□□ 0.94
HMGN4O00479 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.93■□□□□ 0.94
HMGN4O00479 AL117328.2-201ENST00000624617 1940 ntBASIC20.93■□□□□ 0.94
HMGN4O00479 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HMGN4O00479 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.92■□□□□ 0.94
HMGN4O00479 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HMGN4O00479 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HMGN4O00479 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.92■□□□□ 0.94
HMGN4O00479 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
HMGN4O00479 PRTG-204ENST00000561292 833 ntTSL 3 BASIC20.92■□□□□ 0.94
HMGN4O00479 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.92■□□□□ 0.94
HMGN4O00479 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
HMGN4O00479 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
HMGN4O00479 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
HMGN4O00479 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HMGN4O00479 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HMGN4O00479 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.92■□□□□ 0.94
HMGN4O00479 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HMGN4O00479 AL353803.4-201ENST00000565882 1934 ntBASIC20.92■□□□□ 0.94
HMGN4O00479 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HMGN4O00479 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HMGN4O00479 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
HMGN4O00479 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HMGN4O00479 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC20.91■□□□□ 0.94
HMGN4O00479 CLTA-210ENST00000540080 989 ntTSL 2 BASIC20.91■□□□□ 0.94
HMGN4O00479 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.91■□□□□ 0.94
HMGN4O00479 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
HMGN4O00479 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.91■□□□□ 0.94
HMGN4O00479 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.91■□□□□ 0.94
HMGN4O00479 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
HMGN4O00479 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HMGN4O00479 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.9■□□□□ 0.94
HMGN4O00479 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HMGN4O00479 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HMGN4O00479 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HMGN4O00479 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HMGN4O00479 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC20.9■□□□□ 0.94
HMGN4O00479 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.9■□□□□ 0.94
HMGN4O00479 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HMGN4O00479 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.9■□□□□ 0.94
HMGN4O00479 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
HMGN4O00479 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
HMGN4O00479 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
HMGN4O00479 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
HMGN4O00479 BX664725.1-201ENST00000438252 379 ntBASIC20.89■□□□□ 0.93
HMGN4O00479 MIR6722-201ENST00000617286 78 ntBASIC20.89■□□□□ 0.93
HMGN4O00479 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms