Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 AC022748.3-201ENST00000621828 275 ntBASIC12.93□□□□□ -0.34
USB1Q9BQ65 AC073592.7-201ENST00000623659 507 ntBASIC12.93□□□□□ -0.34
USB1Q9BQ65 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
USB1Q9BQ65 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
USB1Q9BQ65 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
USB1Q9BQ65 NFATC1-204ENST00000397790 3453 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
USB1Q9BQ65 FXR1-220ENST00000491062 1768 ntTSL 2 BASIC12.93□□□□□ -0.34
USB1Q9BQ65 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC12.93□□□□□ -0.34
USB1Q9BQ65 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
USB1Q9BQ65 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
USB1Q9BQ65 IRAK4-202ENST00000440781 1409 ntTSL 2 BASIC12.93□□□□□ -0.34
USB1Q9BQ65 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
USB1Q9BQ65 CCDC32-214ENST00000561011 1577 ntTSL 2 BASIC12.93□□□□□ -0.34
USB1Q9BQ65 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC12.93□□□□□ -0.34
USB1Q9BQ65 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
USB1Q9BQ65 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
USB1Q9BQ65 SPTBN2-204ENST00000529997 8085 ntTSL 5 BASIC12.93□□□□□ -0.34
USB1Q9BQ65 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC12.93□□□□□ -0.34
USB1Q9BQ65 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC12.93□□□□□ -0.34
USB1Q9BQ65 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC12.93□□□□□ -0.34
USB1Q9BQ65 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC12.93□□□□□ -0.34
USB1Q9BQ65 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC12.93□□□□□ -0.34
USB1Q9BQ65 C10orf88-204ENST00000481909 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
USB1Q9BQ65 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
USB1Q9BQ65 CHMP7-201ENST00000313219 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
USB1Q9BQ65 IL20RA-207ENST00000541547 3382 ntTSL 2 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
USB1Q9BQ65 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 CARHSP1-202ENST00000396593 3026 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
USB1Q9BQ65 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
USB1Q9BQ65 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
USB1Q9BQ65 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
USB1Q9BQ65 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
USB1Q9BQ65 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 MAP2K3-203ENST00000361818 2034 ntTSL 5 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
USB1Q9BQ65 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
USB1Q9BQ65 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 BCYRN1-201ENST00000418539 200 ntBASIC12.92□□□□□ -0.34
USB1Q9BQ65 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 ARPP21-217ENST00000436702 561 ntTSL 4 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 GXYLT1P1-201ENST00000446657 490 ntBASIC12.92□□□□□ -0.34
USB1Q9BQ65 ANAPC10-202ENST00000451299 928 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
USB1Q9BQ65 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
USB1Q9BQ65 MARK2P5-201ENST00000507649 634 ntBASIC12.92□□□□□ -0.34
USB1Q9BQ65 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
USB1Q9BQ65 ZNF767P-206ENST00000513792 565 ntBASIC12.92□□□□□ -0.34
USB1Q9BQ65 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 CCNC-217ENST00000523985 958 ntTSL 2 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
USB1Q9BQ65 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
USB1Q9BQ65 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 LINC01892-202ENST00000583985 540 ntTSL 4 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
USB1Q9BQ65 AL158050.2-201ENST00000605336 568 ntBASIC12.92□□□□□ -0.34
USB1Q9BQ65 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC12.92□□□□□ -0.34
USB1Q9BQ65 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 AC020910.5-201ENST00000623668 1865 ntBASIC12.92□□□□□ -0.34
USB1Q9BQ65 AC006963.1-201ENST00000624003 1052 ntBASIC12.92□□□□□ -0.34
USB1Q9BQ65 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
USB1Q9BQ65 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
USB1Q9BQ65 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
USB1Q9BQ65 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
USB1Q9BQ65 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
USB1Q9BQ65 PER3-209ENST00000614998 6261 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
USB1Q9BQ65 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
USB1Q9BQ65 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
USB1Q9BQ65 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
USB1Q9BQ65 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
USB1Q9BQ65 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
USB1Q9BQ65 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
USB1Q9BQ65 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms