Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
IFT140Q96RY7 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
IFT140Q96RY7 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
IFT140Q96RY7 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
IFT140Q96RY7 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
IFT140Q96RY7 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
IFT140Q96RY7 SPINK2-201ENST00000248701 613 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
IFT140Q96RY7 GRP-201ENST00000256857 848 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
IFT140Q96RY7 RNF170-202ENST00000319073 1265 ntTSL 2 BASIC22.35■■□□□ 1.17
IFT140Q96RY7 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
IFT140Q96RY7 MGST3-204ENST00000367888 778 ntTSL 3 BASIC22.35■■□□□ 1.17
IFT140Q96RY7 AC004884.1-201ENST00000393647 319 ntBASIC22.35■■□□□ 1.17
IFT140Q96RY7 SATB2-AS1-202ENST00000441234 468 ntTSL 3 BASIC22.35■■□□□ 1.17
IFT140Q96RY7 RN7SL148P-201ENST00000467120 279 ntBASIC22.35■■□□□ 1.17
IFT140Q96RY7 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC22.35■■□□□ 1.17
IFT140Q96RY7 GBAP1-208ENST00000566701 1546 ntBASIC22.35■■□□□ 1.17
IFT140Q96RY7 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
IFT140Q96RY7 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
IFT140Q96RY7 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
IFT140Q96RY7 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC22.35■■□□□ 1.17
IFT140Q96RY7 AC084018.2-201ENST00000613093 2607 ntBASIC22.35■■□□□ 1.17
IFT140Q96RY7 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
IFT140Q96RY7 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
IFT140Q96RY7 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
IFT140Q96RY7 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC22.35■■□□□ 1.17
IFT140Q96RY7 ANAPC15-201ENST00000227618 886 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
IFT140Q96RY7 KRTAP10-10-201ENST00000380095 1100 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
IFT140Q96RY7 AC104623.1-201ENST00000446357 546 ntTSL 4 BASIC22.34■■□□□ 1.17
IFT140Q96RY7 AC067942.2-201ENST00000506227 1268 ntBASIC22.34■■□□□ 1.17
IFT140Q96RY7 DERL1-204ENST00000519018 575 ntTSL 4 BASIC22.34■■□□□ 1.17
IFT140Q96RY7 HDAC2-AS2-216ENST00000522844 808 ntTSL 5 BASIC22.34■■□□□ 1.17
IFT140Q96RY7 RN7SL827P-201ENST00000607480 288 ntBASIC22.34■■□□□ 1.17
IFT140Q96RY7 MGST3-214ENST00000627653 1130 ntTSL 5 BASIC22.34■■□□□ 1.17
IFT140Q96RY7 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC22.34■■□□□ 1.17
IFT140Q96RY7 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
IFT140Q96RY7 TMUB2-205ENST00000587172 1598 ntTSL 2 BASIC22.34■■□□□ 1.17
IFT140Q96RY7 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
IFT140Q96RY7 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
IFT140Q96RY7 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
IFT140Q96RY7 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
IFT140Q96RY7 SRL-202ENST00000537996 1814 ntTSL 2 BASIC22.34■■□□□ 1.17
IFT140Q96RY7 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC22.34■■□□□ 1.17
IFT140Q96RY7 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
IFT140Q96RY7 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
IFT140Q96RY7 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
IFT140Q96RY7 RSPH1-202ENST00000398352 937 ntTSL 5 BASIC22.34■■□□□ 1.17
IFT140Q96RY7 B3GALNT1-204ENST00000417187 1107 ntTSL 2 BASIC22.34■■□□□ 1.17
IFT140Q96RY7 AC002066.1-201ENST00000446355 514 ntTSL 5 BASIC22.34■■□□□ 1.17
IFT140Q96RY7 SSSCA1-203ENST00000526877 713 ntTSL 3 BASIC22.34■■□□□ 1.17
IFT140Q96RY7 AP001922.5-201ENST00000527803 651 ntTSL 4 BASIC22.34■■□□□ 1.17
IFT140Q96RY7 SNRPD2-203ENST00000585392 379 ntTSL 3 BASIC22.34■■□□□ 1.17
IFT140Q96RY7 U62317.4-201ENST00000609758 448 ntBASIC22.34■■□□□ 1.17
IFT140Q96RY7 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC22.34■■□□□ 1.17
IFT140Q96RY7 LINC00959-202ENST00000637128 826 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
IFT140Q96RY7 LINC00910-201ENST00000341011 2303 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
IFT140Q96RY7 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
IFT140Q96RY7 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC22.33■■□□□ 1.17
IFT140Q96RY7 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
IFT140Q96RY7 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC22.33■■□□□ 1.17
IFT140Q96RY7 DANT2-201ENST00000430756 2079 ntTSL 3 BASIC22.33■■□□□ 1.17
IFT140Q96RY7 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
IFT140Q96RY7 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
IFT140Q96RY7 SPACA5-201ENST00000304355 648 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
IFT140Q96RY7 GSTM1-204ENST00000369823 852 ntTSL 3 BASIC22.33■■□□□ 1.16
IFT140Q96RY7 GAPDH-202ENST00000396856 1266 ntTSL 5 BASIC22.33■■□□□ 1.16
IFT140Q96RY7 CROT-203ENST00000419147 2959 ntTSL 2 BASIC22.33■■□□□ 1.16
IFT140Q96RY7 DNM1P48-201ENST00000419538 439 ntBASIC22.33■■□□□ 1.16
IFT140Q96RY7 VPS33A-202ENST00000451053 1154 ntTSL 3 BASIC22.33■■□□□ 1.16
IFT140Q96RY7 PRDX2P3-201ENST00000515779 586 ntBASIC22.33■■□□□ 1.16
IFT140Q96RY7 ROM1-205ENST00000534093 862 ntAPPRIS ALT2 TSL 2 BASIC22.33■■□□□ 1.16
IFT140Q96RY7 AC018868.2-201ENST00000559655 1259 ntBASIC22.33■■□□□ 1.16
IFT140Q96RY7 SNORD55-201ENST00000581525 80 ntBASIC22.33■■□□□ 1.16
IFT140Q96RY7 MIR1587-201ENST00000583319 53 ntBASIC22.33■■□□□ 1.16
IFT140Q96RY7 ZNF268-219ENST00000611984 583 ntTSL 5 BASIC22.33■■□□□ 1.16
IFT140Q96RY7 AC022167.5-201ENST00000636296 1250 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.16
IFT140Q96RY7 MIR941-1-201ENST00000636396 72 ntBASIC22.33■■□□□ 1.16
IFT140Q96RY7 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
IFT140Q96RY7 SETMAR-205ENST00000425863 1657 ntTSL 2 BASIC22.33■■□□□ 1.16
IFT140Q96RY7 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
IFT140Q96RY7 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC22.32■■□□□ 1.16
IFT140Q96RY7 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC22.32■■□□□ 1.16
IFT140Q96RY7 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
IFT140Q96RY7 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC22.32■■□□□ 1.16
IFT140Q96RY7 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
IFT140Q96RY7 COX4I2-201ENST00000376075 693 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
IFT140Q96RY7 HIST1H2BN-201ENST00000396980 432 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
IFT140Q96RY7 HNRNPA1P30-202ENST00000440699 997 ntBASIC22.32■■□□□ 1.16
IFT140Q96RY7 AC104117.1-201ENST00000517817 900 ntBASIC22.32■■□□□ 1.16
IFT140Q96RY7 AL606834.1-201ENST00000553836 1169 ntBASIC22.32■■□□□ 1.16
IFT140Q96RY7 SERPING1-213ENST00000619430 634 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
IFT140Q96RY7 LINC01615-203ENST00000634877 673 ntTSL 5 BASIC22.32■■□□□ 1.16
IFT140Q96RY7 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
IFT140Q96RY7 CICP14-201ENST00000629111 2732 ntBASIC22.32■■□□□ 1.16
IFT140Q96RY7 LMX1A-203ENST00000367893 1342 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
IFT140Q96RY7 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
IFT140Q96RY7 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
IFT140Q96RY7 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC22.32■■□□□ 1.16
IFT140Q96RY7 AC124319.4-201ENST00000622931 2161 ntBASIC22.32■■□□□ 1.16
IFT140Q96RY7 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC22.32■■□□□ 1.16
IFT140Q96RY7 FAM90A27P-201ENST00000593323 1370 ntBASIC22.31■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms