Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC14.4□□□□□ -0.1
USP39Q53GS9 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
USP39Q53GS9 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
USP39Q53GS9 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP39Q53GS9 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
USP39Q53GS9 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC14.4□□□□□ -0.1
USP39Q53GS9 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
USP39Q53GS9 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP39Q53GS9 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP39Q53GS9 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC14.4□□□□□ -0.1
USP39Q53GS9 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP39Q53GS9 AL928921.2-201ENST00000641325 2442 ntBASIC14.4□□□□□ -0.1
USP39Q53GS9 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
USP39Q53GS9 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP39Q53GS9 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP39Q53GS9 POLR2L-201ENST00000322028 892 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP39Q53GS9 JTB-202ENST00000356648 1040 ntTSL 2 BASIC14.4□□□□□ -0.1
USP39Q53GS9 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC14.4□□□□□ -0.1
USP39Q53GS9 SAT1-201ENST00000379251 801 ntTSL 2 BASIC14.4□□□□□ -0.1
USP39Q53GS9 SAT1-202ENST00000379253 909 ntTSL 2 BASIC14.4□□□□□ -0.1
USP39Q53GS9 SAT1-203ENST00000379254 868 ntTSL 3 BASIC14.4□□□□□ -0.1
USP39Q53GS9 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP39Q53GS9 MIR645-201ENST00000385283 94 ntBASIC14.4□□□□□ -0.1
USP39Q53GS9 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC14.4□□□□□ -0.1
USP39Q53GS9 IDS-203ENST00000428056 1213 ntTSL 2 BASIC14.4□□□□□ -0.1
USP39Q53GS9 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC14.4□□□□□ -0.1
USP39Q53GS9 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP39Q53GS9 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP39Q53GS9 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC14.4□□□□□ -0.1
USP39Q53GS9 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
USP39Q53GS9 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP39Q53GS9 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC14.4□□□□□ -0.1
USP39Q53GS9 RN7SL665P-201ENST00000578793 300 ntBASIC14.4□□□□□ -0.1
USP39Q53GS9 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC14.4□□□□□ -0.1
USP39Q53GS9 UXT-AS1-202ENST00000591832 565 ntTSL 4 BASIC14.4□□□□□ -0.1
USP39Q53GS9 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC14.4□□□□□ -0.1
USP39Q53GS9 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC14.4□□□□□ -0.1
USP39Q53GS9 AC011247.3-201ENST00000603297 438 ntBASIC14.4□□□□□ -0.1
USP39Q53GS9 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP39Q53GS9 NOP16-211ENST00000621444 954 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
USP39Q53GS9 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC14.4□□□□□ -0.1
USP39Q53GS9 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC14.4□□□□□ -0.1
USP39Q53GS9 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
USP39Q53GS9 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC14.4□□□□□ -0.1
USP39Q53GS9 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC14.4□□□□□ -0.1
USP39Q53GS9 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP39Q53GS9 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
USP39Q53GS9 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
USP39Q53GS9 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC14.4□□□□□ -0.1
USP39Q53GS9 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP39Q53GS9 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC14.4□□□□□ -0.1
USP39Q53GS9 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
USP39Q53GS9 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
USP39Q53GS9 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
USP39Q53GS9 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
USP39Q53GS9 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
USP39Q53GS9 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
USP39Q53GS9 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC14.39□□□□□ -0.11
USP39Q53GS9 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
USP39Q53GS9 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
USP39Q53GS9 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC14.39□□□□□ -0.11
USP39Q53GS9 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
USP39Q53GS9 SRC-202ENST00000373558 4304 ntTSL 5 BASIC14.39□□□□□ -0.11
USP39Q53GS9 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
USP39Q53GS9 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC14.39□□□□□ -0.11
USP39Q53GS9 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
USP39Q53GS9 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
USP39Q53GS9 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
USP39Q53GS9 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC14.39□□□□□ -0.11
USP39Q53GS9 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
USP39Q53GS9 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
USP39Q53GS9 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
USP39Q53GS9 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
USP39Q53GS9 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
USP39Q53GS9 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
USP39Q53GS9 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
USP39Q53GS9 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC14.39□□□□□ -0.11
USP39Q53GS9 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC14.39□□□□□ -0.11
USP39Q53GS9 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
USP39Q53GS9 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
USP39Q53GS9 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC14.39□□□□□ -0.11
USP39Q53GS9 CSNK1G2P1-201ENST00000442675 955 ntBASIC14.39□□□□□ -0.11
USP39Q53GS9 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC14.39□□□□□ -0.11
USP39Q53GS9 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
USP39Q53GS9 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC14.39□□□□□ -0.11
USP39Q53GS9 NEU3-207ENST00000534628 746 ntTSL 2 BASIC14.39□□□□□ -0.11
USP39Q53GS9 RN7SL357P-201ENST00000581065 298 ntBASIC14.39□□□□□ -0.11
USP39Q53GS9 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
USP39Q53GS9 AC006158.1-201ENST00000610661 249 ntBASIC14.39□□□□□ -0.11
USP39Q53GS9 AL451007.2-201ENST00000632004 563 ntBASIC14.39□□□□□ -0.11
USP39Q53GS9 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
USP39Q53GS9 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC14.39□□□□□ -0.11
USP39Q53GS9 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC14.39□□□□□ -0.11
USP39Q53GS9 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
USP39Q53GS9 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC14.39□□□□□ -0.11
USP39Q53GS9 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC14.39□□□□□ -0.11
USP39Q53GS9 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC14.39□□□□□ -0.11
USP39Q53GS9 BCL9L-201ENST00000334801 10005 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
USP39Q53GS9 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
USP39Q53GS9 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms