Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC114781.1-201ENST00000450559 1028 ntBASIC17.05■□□□□ 0.32
COL5A3P25940 AL450346.2-201ENST00000495602 1024 ntBASIC17.05■□□□□ 0.32
COL5A3P25940 AC140847.2-201ENST00000545923 501 ntTSL 3 BASIC17.05■□□□□ 0.32
COL5A3P25940 BIRC5-211ENST00000592734 386 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL5A3P25940 AC063977.2-201ENST00000601996 421 ntBASIC17.05■□□□□ 0.32
COL5A3P25940 PILRB-213ENST00000609309 993 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL5A3P25940 PACRG-AS3-204ENST00000620150 567 ntTSL 4 BASIC17.05■□□□□ 0.32
COL5A3P25940 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL5A3P25940 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC17.05■□□□□ 0.32
COL5A3P25940 FAM86C1-202ENST00000359244 2110 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
COL5A3P25940 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL5A3P25940 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC17.05■□□□□ 0.32
COL5A3P25940 HPGD-204ENST00000504433 1910 ntTSL 2 BASIC17.05■□□□□ 0.32
COL5A3P25940 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
COL5A3P25940 IGHE-202ENST00000641420 1485 ntAPPRIS P5 BASIC17.05■□□□□ 0.32
COL5A3P25940 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
COL5A3P25940 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
COL5A3P25940 PI4KAP2-201ENST00000360806 2080 ntBASIC17.04■□□□□ 0.32
COL5A3P25940 ENSA-208ENST00000369014 2085 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A3P25940 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A3P25940 AC114939.1-201ENST00000520980 514 ntTSL 5 BASIC17.04■□□□□ 0.32
COL5A3P25940 FTH1-205ENST00000529631 507 ntTSL 4 BASIC17.04■□□□□ 0.32
COL5A3P25940 AC026150.1-201ENST00000562992 701 ntTSL 5 BASIC17.04■□□□□ 0.32
COL5A3P25940 LIMS1-204ENST00000409441 1627 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A3P25940 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A3P25940 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC17.04■□□□□ 0.32
COL5A3P25940 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A3P25940 MRPS9-201ENST00000258455 1500 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A3P25940 TLN2-202ENST00000472902 2116 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A3P25940 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A3P25940 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A3P25940 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A3P25940 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC17.04■□□□□ 0.32
COL5A3P25940 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
COL5A3P25940 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A3P25940 ADRA1A-210ENST00000519229 1838 ntTSL 5 BASIC17.04■□□□□ 0.32
COL5A3P25940 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC17.04■□□□□ 0.32
COL5A3P25940 CDK20-209ENST00000605159 1860 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A3P25940 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A3P25940 AC091729.3-203ENST00000413706 674 ntTSL 5 BASIC17.04■□□□□ 0.32
COL5A3P25940 AP000343.1-201ENST00000440602 385 ntBASIC17.04■□□□□ 0.32
COL5A3P25940 PRSS45-201ENST00000442359 687 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A3P25940 SLC25A15P1-201ENST00000456738 342 ntBASIC17.04■□□□□ 0.32
COL5A3P25940 AC067942.1-202ENST00000471756 1057 ntBASIC17.04■□□□□ 0.32
COL5A3P25940 IQSEC2-205ENST00000498281 673 ntTSL 3 BASIC17.04■□□□□ 0.32
COL5A3P25940 AC092656.1-202ENST00000515843 998 ntTSL 4 BASIC17.04■□□□□ 0.32
COL5A3P25940 AC068858.1-201ENST00000525114 1239 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A3P25940 IL32-230ENST00000551122 733 ntAPPRIS ALT2 TSL 3 BASIC17.04■□□□□ 0.32
COL5A3P25940 AL583722.3-201ENST00000553433 503 ntTSL 4 BASIC17.04■□□□□ 0.32
COL5A3P25940 TPST2P1-201ENST00000564073 1102 ntBASIC17.04■□□□□ 0.32
COL5A3P25940 RN7SL202P-201ENST00000584410 262 ntBASIC17.04■□□□□ 0.32
COL5A3P25940 ACTBP9-201ENST00000587663 1099 ntBASIC17.04■□□□□ 0.32
COL5A3P25940 AC022001.3-201ENST00000606330 596 ntBASIC17.04■□□□□ 0.32
COL5A3P25940 DUX4L33-201ENST00000635217 958 ntBASIC17.04■□□□□ 0.32
COL5A3P25940 CDIPT-AS1-203ENST00000638164 713 ntBASIC17.04■□□□□ 0.32
COL5A3P25940 MEIS2-215ENST00000559561 1442 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
COL5A3P25940 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A3P25940 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC17.04■□□□□ 0.32
COL5A3P25940 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
COL5A3P25940 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC17.04■□□□□ 0.32
COL5A3P25940 DCAF13-201ENST00000297579 2642 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A3P25940 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
COL5A3P25940 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A3P25940 GAPDH-205ENST00000396861 1348 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
COL5A3P25940 OLFML1-204ENST00000530135 1620 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
COL5A3P25940 AC023509.3-202ENST00000591834 1609 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
COL5A3P25940 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC17.03■□□□□ 0.32
COL5A3P25940 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
COL5A3P25940 AC009093.1-201ENST00000566070 2099 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A3P25940 CTSD-208ENST00000636843 1512 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
COL5A3P25940 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
COL5A3P25940 AGPAT1-203ENST00000375107 2234 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A3P25940 CNOT4-204ENST00000414802 1687 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A3P25940 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A3P25940 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC17.03■□□□□ 0.32
COL5A3P25940 EDF1-201ENST00000224073 640 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A3P25940 GRP-201ENST00000256857 848 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A3P25940 PIGL-202ENST00000395844 1257 ntTSL 5 BASIC17.03■□□□□ 0.32
COL5A3P25940 IGSF23-201ENST00000402988 989 ntAPPRIS P2 TSL 3 BASIC17.03■□□□□ 0.32
COL5A3P25940 NOS2P3-201ENST00000411468 867 ntBASIC17.03■□□□□ 0.32
COL5A3P25940 NOS2P2-201ENST00000426269 867 ntBASIC17.03■□□□□ 0.32
COL5A3P25940 TMCO1-203ENST00000464650 1100 ntTSL 2 BASIC17.03■□□□□ 0.32
COL5A3P25940 RN7SL794P-201ENST00000469816 280 ntBASIC17.03■□□□□ 0.32
COL5A3P25940 RN7SL479P-201ENST00000472003 300 ntBASIC17.03■□□□□ 0.32
COL5A3P25940 FAR1-IT1-201ENST00000525233 368 ntTSL 3 BASIC17.03■□□□□ 0.32
COL5A3P25940 WASIR2-201ENST00000527434 1054 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A3P25940 GOLGA2P10-201ENST00000550961 817 ntBASIC17.03■□□□□ 0.32
COL5A3P25940 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A3P25940 HOXA1-202ENST00000355633 2016 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A3P25940 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A3P25940 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A3P25940 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A3P25940 ZNF793-205ENST00000587143 1488 ntAPPRIS P1 TSL 4 BASIC17.03■□□□□ 0.32
COL5A3P25940 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC17.03■□□□□ 0.32
COL5A3P25940 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
COL5A3P25940 KIR2DL4-203ENST00000357494 1396 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
COL5A3P25940 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL5A3P25940 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC17.02■□□□□ 0.32
COL5A3P25940 ATF3-202ENST00000341491 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
COL5A3P25940 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms