Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
SDCBPO00560 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC12.12□□□□□ -0.47
SDCBPO00560 HARS-202ENST00000415192 1401 ntTSL 2 BASIC12.12□□□□□ -0.47
SDCBPO00560 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
SDCBPO00560 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC12.12□□□□□ -0.47
SDCBPO00560 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC12.12□□□□□ -0.47
SDCBPO00560 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
SDCBPO00560 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
SDCBPO00560 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
SDCBPO00560 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
SDCBPO00560 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
SDCBPO00560 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
SDCBPO00560 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
SDCBPO00560 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
SDCBPO00560 CAMKV-215ENST00000488336 2905 ntTSL 2 BASIC12.12□□□□□ -0.47
SDCBPO00560 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
SDCBPO00560 DHX30-215ENST00000619982 3574 ntAPPRIS ALT1 TSL 5 BASIC12.12□□□□□ -0.47
SDCBPO00560 INCENP-201ENST00000278849 3698 ntAPPRIS P3 TSL 5 BASIC12.12□□□□□ -0.47
SDCBPO00560 SAMD14-202ENST00000330175 4425 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
SDCBPO00560 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC12.12□□□□□ -0.47
SDCBPO00560 MARK2P9-201ENST00000430958 1727 ntBASIC12.12□□□□□ -0.47
SDCBPO00560 AC127496.1-201ENST00000576234 3133 ntTSL 2 BASIC12.12□□□□□ -0.47
SDCBPO00560 COBLL1-225ENST00000629362 3868 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
SDCBPO00560 TRIM69-206ENST00000559390 2486 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
SDCBPO00560 KLHL32-206ENST00000544166 2864 ntTSL 2 BASIC12.12□□□□□ -0.47
SDCBPO00560 LPO-201ENST00000262290 2979 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
SDCBPO00560 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
SDCBPO00560 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
SDCBPO00560 LBX2-201ENST00000341396 886 ntTSL 3 BASIC12.12□□□□□ -0.47
SDCBPO00560 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC12.12□□□□□ -0.47
SDCBPO00560 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC12.12□□□□□ -0.47
SDCBPO00560 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
SDCBPO00560 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
SDCBPO00560 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC12.12□□□□□ -0.47
SDCBPO00560 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC12.12□□□□□ -0.47
SDCBPO00560 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC12.12□□□□□ -0.47
SDCBPO00560 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC12.12□□□□□ -0.47
SDCBPO00560 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC12.12□□□□□ -0.47
SDCBPO00560 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
SDCBPO00560 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
SDCBPO00560 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC12.12□□□□□ -0.47
SDCBPO00560 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
SDCBPO00560 MIR4683-201ENST00000579659 81 ntBASIC12.12□□□□□ -0.47
SDCBPO00560 RN7SL713P-201ENST00000582127 302 ntBASIC12.12□□□□□ -0.47
SDCBPO00560 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC12.12□□□□□ -0.47
SDCBPO00560 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
SDCBPO00560 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC12.12□□□□□ -0.47
SDCBPO00560 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
SDCBPO00560 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC12.12□□□□□ -0.47
SDCBPO00560 PFAS-212ENST00000625942 396 ntTSL 5 BASIC12.12□□□□□ -0.47
SDCBPO00560 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC12.12□□□□□ -0.47
SDCBPO00560 PEAR1-202ENST00000338302 4970 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
SDCBPO00560 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC12.12□□□□□ -0.47
SDCBPO00560 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
SDCBPO00560 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
SDCBPO00560 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC12.12□□□□□ -0.47
SDCBPO00560 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
SDCBPO00560 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
SDCBPO00560 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
SDCBPO00560 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
SDCBPO00560 PAAF1-201ENST00000310571 4994 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
SDCBPO00560 UNC13B-202ENST00000378496 5063 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
SDCBPO00560 AL445250.1-201ENST00000641671 2259 ntBASIC12.12□□□□□ -0.47
SDCBPO00560 RUFY4-201ENST00000344321 2352 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
SDCBPO00560 TRAF3-208ENST00000560371 7640 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
SDCBPO00560 TCF12-201ENST00000267811 6061 ntAPPRIS ALT1 TSL 1 (best) BASIC12.12□□□□□ -0.47
SDCBPO00560 PAM-207ENST00000455264 2898 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
SDCBPO00560 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC12.12□□□□□ -0.47
SDCBPO00560 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC12.12□□□□□ -0.47
SDCBPO00560 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 ZNF683-205ENST00000436292 1712 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
SDCBPO00560 F2-205ENST00000530231 1849 ntTSL 5 BASIC12.11□□□□□ -0.47
SDCBPO00560 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC12.11□□□□□ -0.47
SDCBPO00560 AL772337.1-201ENST00000399186 2014 ntTSL 5 BASIC12.11□□□□□ -0.47
SDCBPO00560 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC12.11□□□□□ -0.47
SDCBPO00560 C2-206ENST00000442278 2434 ntTSL 2 BASIC12.11□□□□□ -0.47
SDCBPO00560 AC005394.2-201ENST00000592347 3113 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 AC016245.1-201ENST00000570335 3204 ntTSL 2 BASIC12.11□□□□□ -0.47
SDCBPO00560 SCOC-210ENST00000608372 5129 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 SUCO-202ENST00000367723 5916 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 DDX54-202ENST00000314045 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 POTEE-201ENST00000356920 4159 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 ADCY4-202ENST00000418030 3353 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC12.11□□□□□ -0.47
SDCBPO00560 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 HYOU1-220ENST00000617285 4529 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC12.11□□□□□ -0.47
SDCBPO00560 CYP26B1-205ENST00000546307 4331 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 PRMT7-201ENST00000339507 4238 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
SDCBPO00560 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC12.11□□□□□ -0.47
SDCBPO00560 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
SDCBPO00560 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
SDCBPO00560 GRAP-202ENST00000395635 834 ntTSL 2 BASIC12.11□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms