Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC15.96■□□□□ 0.15
CCNA1P78396 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC15.96■□□□□ 0.15
CCNA1P78396 AC005274.1-201ENST00000623460 802 ntBASIC15.96■□□□□ 0.15
CCNA1P78396 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC15.96■□□□□ 0.15
CCNA1P78396 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
CCNA1P78396 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCNA1P78396 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC15.96■□□□□ 0.15
CCNA1P78396 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CCNA1P78396 AC067750.1-201ENST00000608826 6545 ntBASIC15.96■□□□□ 0.15
CCNA1P78396 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
CCNA1P78396 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
CCNA1P78396 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCNA1P78396 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCNA1P78396 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCNA1P78396 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
CCNA1P78396 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC15.96■□□□□ 0.14
CCNA1P78396 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
CCNA1P78396 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
CCNA1P78396 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC15.96■□□□□ 0.14
CCNA1P78396 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.14
CCNA1P78396 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCNA1P78396 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC15.95■□□□□ 0.14
CCNA1P78396 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CCNA1P78396 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CCNA1P78396 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC15.95■□□□□ 0.14
CCNA1P78396 AC092115.1-201ENST00000566277 1402 ntBASIC15.95■□□□□ 0.14
CCNA1P78396 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCNA1P78396 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCNA1P78396 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCNA1P78396 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCNA1P78396 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC15.95■□□□□ 0.14
CCNA1P78396 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CCNA1P78396 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
CCNA1P78396 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC15.95■□□□□ 0.14
CCNA1P78396 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC15.95■□□□□ 0.14
CCNA1P78396 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
CCNA1P78396 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC15.95■□□□□ 0.14
CCNA1P78396 CD81-209ENST00000492627 886 ntTSL 3 BASIC15.95■□□□□ 0.14
CCNA1P78396 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
CCNA1P78396 MBP-238ENST00000580402 915 ntTSL 5 BASIC15.95■□□□□ 0.14
CCNA1P78396 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC15.95■□□□□ 0.14
CCNA1P78396 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC15.95■□□□□ 0.14
CCNA1P78396 LINC01726-201ENST00000624692 1253 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CCNA1P78396 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
CCNA1P78396 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
CCNA1P78396 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
CCNA1P78396 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
CCNA1P78396 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
CCNA1P78396 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
CCNA1P78396 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
CCNA1P78396 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
CCNA1P78396 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCNA1P78396 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC15.95■□□□□ 0.14
CCNA1P78396 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCNA1P78396 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCNA1P78396 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCNA1P78396 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
CCNA1P78396 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCNA1P78396 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
CCNA1P78396 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC15.94■□□□□ 0.14
CCNA1P78396 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CCNA1P78396 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CCNA1P78396 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CCNA1P78396 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CCNA1P78396 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
CCNA1P78396 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
CCNA1P78396 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC15.94■□□□□ 0.14
CCNA1P78396 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
CCNA1P78396 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC15.94■□□□□ 0.14
CCNA1P78396 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CCNA1P78396 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CCNA1P78396 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC15.94■□□□□ 0.14
CCNA1P78396 HNRNPA1P58-201ENST00000403629 610 ntBASIC15.94■□□□□ 0.14
CCNA1P78396 ACTBP7-201ENST00000418351 1124 ntBASIC15.94■□□□□ 0.14
CCNA1P78396 ARSEP1-202ENST00000430152 499 ntTSL 3 BASIC15.94■□□□□ 0.14
CCNA1P78396 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC15.94■□□□□ 0.14
CCNA1P78396 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC15.94■□□□□ 0.14
CCNA1P78396 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CCNA1P78396 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC15.94■□□□□ 0.14
CCNA1P78396 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
CCNA1P78396 ESR1-214ENST00000638569 132 ntTSL 5 BASIC15.94■□□□□ 0.14
CCNA1P78396 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CCNA1P78396 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC15.94■□□□□ 0.14
CCNA1P78396 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC15.94■□□□□ 0.14
CCNA1P78396 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
CCNA1P78396 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CCNA1P78396 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CCNA1P78396 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
CCNA1P78396 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
CCNA1P78396 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
CCNA1P78396 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
CCNA1P78396 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC15.94■□□□□ 0.14
CCNA1P78396 PES1P2-201ENST00000449745 1735 ntBASIC15.94■□□□□ 0.14
CCNA1P78396 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
CCNA1P78396 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCNA1P78396 AC015909.5-201ENST00000624336 2266 ntBASIC15.93■□□□□ 0.14
CCNA1P78396 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
CCNA1P78396 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC15.93■□□□□ 0.14
CCNA1P78396 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
CCNA1P78396 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms