Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
ZC3H4Q9UPT8 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 GSN-215ENST00000545652 2428 ntTSL 2 BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 GRK6P1-201ENST00000400595 1711 ntBASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 WFDC3-201ENST00000243938 1000 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 S100A2-202ENST00000368708 998 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 OR7E155P-201ENST00000412208 1014 ntBASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 AC013436.1-201ENST00000425077 422 ntTSL 3 BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 AC007391.1-201ENST00000433893 504 ntTSL 2 BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 AC017007.3-201ENST00000479865 435 ntBASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 AC024405.2-201ENST00000528459 810 ntTSL 5 BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 AC023051.2-201ENST00000541141 460 ntBASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 INCA1-204ENST00000576820 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 ANAPC11-214ENST00000578544 403 ntTSL 3 BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 NAT9-219ENST00000582524 573 ntTSL 4 BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 LINC02081-201ENST00000586185 877 ntTSL 3 BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 AC007292.1-201ENST00000594444 746 ntTSL 2 BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 MIR6893-201ENST00000613458 69 ntBASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
ZC3H4Q9UPT8 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 DAP3-201ENST00000343043 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 RFPL3-201ENST00000249007 1488 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 HLA-DMB-258ENST00000418107 1397 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 ARR3-201ENST00000307959 1292 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 IZUMO1R-201ENST00000328458 798 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 GLRX2-202ENST00000367440 1131 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 HCRTR1-201ENST00000373705 1170 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 TISP43-202ENST00000409982 1039 ntAPPRIS P5 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 HNRNPA3P12-201ENST00000437410 1063 ntBASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 CDKN2A-AS1-201ENST00000441769 823 ntBASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 AC019205.2-201ENST00000442007 1083 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 IGKV1OR2-108-201ENST00000453673 353 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 DLG4-206ENST00000485100 1004 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 AC112250.1-201ENST00000504640 745 ntBASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 AP003031.2-205ENST00000531263 683 ntTSL 2 BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 ALG10B-203ENST00000551464 571 ntTSL 3 BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 AL139316.1-201ENST00000555643 568 ntTSL 3 BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 SMIM28-201ENST00000573100 855 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 NAT9-204ENST00000578822 839 ntTSL 3 BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 LINC01012-203ENST00000628762 743 ntTSL 5 BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
ZC3H4Q9UPT8 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 AL137077.2-201ENST00000635124 1608 ntBASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
ZC3H4Q9UPT8 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms