Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 SMYD4-201ENST00000305513 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 GGA3-214ENST00000582717 2255 ntTSL 2 BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 JOSD1-201ENST00000216039 3648 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
AMBRA1Q9C0C7 SLC2A14-213ENST00000539924 1873 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.27
AMBRA1Q9C0C7 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC13.33□□□□□ -0.27
AMBRA1Q9C0C7 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.27
AMBRA1Q9C0C7 ZNF384-201ENST00000319770 3266 ntTSL 2 BASIC13.33□□□□□ -0.27
AMBRA1Q9C0C7 DNM3-201ENST00000355305 3280 ntTSL 5 BASIC13.33□□□□□ -0.27
AMBRA1Q9C0C7 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC13.33□□□□□ -0.27
AMBRA1Q9C0C7 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.27
AMBRA1Q9C0C7 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
AMBRA1Q9C0C7 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC13.33□□□□□ -0.27
AMBRA1Q9C0C7 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 CADM1-204ENST00000536727 3520 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 FNTB-201ENST00000246166 2834 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 ACTN1-204ENST00000438964 3043 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 RBSN-207ENST00000476527 3005 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 GCOM1-214ENST00000587652 2329 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 DKFZP434A062-201ENST00000573103 5021 ntBASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 RAB37-205ENST00000392614 2704 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 ANKRD19P-201ENST00000338192 862 ntBASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 MPV17-206ENST00000402722 827 ntTSL 3 BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 USB1-202ENST00000423271 1217 ntTSL 2 BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 AC104989.1-201ENST00000519711 778 ntBASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 AL358472.3-201ENST00000608147 415 ntBASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 WNT11-204ENST00000621122 789 ntTSL 5 BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 SNX12-206ENST00000622259 661 ntTSL 5 BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 AC026271.4-201ENST00000578214 1833 ntBASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 IFT172-202ENST00000359466 2207 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 ZNF23-203ENST00000393539 3242 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 ERAL1-201ENST00000254928 1925 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 ITPRIPL1-204ENST00000439118 1946 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 C17orf53-203ENST00000585683 2529 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC13.33□□□□□ -0.28
AMBRA1Q9C0C7 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
AMBRA1Q9C0C7 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC13.32□□□□□ -0.28
AMBRA1Q9C0C7 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
AMBRA1Q9C0C7 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC13.32□□□□□ -0.28
AMBRA1Q9C0C7 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
AMBRA1Q9C0C7 SNX12-202ENST00000374274 2376 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
AMBRA1Q9C0C7 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
AMBRA1Q9C0C7 ZNF274-210ENST00000610905 2559 ntAPPRIS P4 TSL 5 BASIC13.32□□□□□ -0.28
AMBRA1Q9C0C7 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
AMBRA1Q9C0C7 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
AMBRA1Q9C0C7 ABCD1P2-201ENST00000429313 1601 ntBASIC13.32□□□□□ -0.28
AMBRA1Q9C0C7 PHF21B-201ENST00000313237 3671 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
AMBRA1Q9C0C7 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
AMBRA1Q9C0C7 COPS7B-223ENST00000611614 2468 ntTSL 3 BASIC13.32□□□□□ -0.28
AMBRA1Q9C0C7 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC13.32□□□□□ -0.28
AMBRA1Q9C0C7 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
AMBRA1Q9C0C7 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
AMBRA1Q9C0C7 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC13.32□□□□□ -0.28
AMBRA1Q9C0C7 OS9-201ENST00000257966 2505 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
AMBRA1Q9C0C7 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC13.32□□□□□ -0.28
AMBRA1Q9C0C7 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms