Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SELENOV-202ENST00000423711 1701 ntTSL 5 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 KDM2B-215ENST00000542973 3170 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 SNORA50C-201ENST00000408535 133 ntBASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 CD8B2-202ENST00000417670 633 ntBASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 AC093214.1-201ENST00000511688 1107 ntBASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 CTBP2P3-201ENST00000585629 1255 ntBASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 OR10B1P-201ENST00000601666 907 ntBASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 SNORA50.1-201ENST00000628590 135 ntBASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 SLC25A17-217ENST00000544408 2060 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 AC115284.2-201ENST00000624646 2054 ntBASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 PAM-207ENST00000455264 2898 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 AMT-239ENST00000636865 1914 ntTSL 5 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 FOSB-212ENST00000592811 3089 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 IL10-202ENST00000423557 1630 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 PRPF4-201ENST00000374198 2787 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 TUBB8P7-202ENST00000564451 2115 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 TBC1D3L-201ENST00000612727 2148 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 MTMR11-201ENST00000369140 2324 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 PTPN6-202ENST00000399448 2159 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 USP39-220ENST00000613444 2161 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 NAA15-201ENST00000296543 6222 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 AC073862.5-201ENST00000624129 2027 ntBASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 NFATC2-207ENST00000610033 2740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 YWHAQ-202ENST00000381844 2216 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 KRT74-201ENST00000305620 2788 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 CDCA3-202ENST00000422785 2760 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 FEM1A-201ENST00000269856 9593 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 NPAS4-201ENST00000311034 3303 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 MTHFSD-204ENST00000546093 2451 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 AC092053.3-201ENST00000641308 4975 ntBASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 KLC2-206ENST00000417856 3015 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 ADAMTSL2-203ENST00000393061 4270 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 PRAM1-201ENST00000423345 2667 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 FAM8A4P-201ENST00000435433 1213 ntBASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 SKA2-202ENST00000437036 625 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 ST13P19-201ENST00000442505 1124 ntBASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 CALM1-205ENST00000553542 877 ntTSL 5 BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 AL132655.2-201ENST00000596276 594 ntBASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 COPS7B-203ENST00000373608 2563 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 AC007541.1-201ENST00000570282 1469 ntBASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 FAM120B-205ENST00000630384 3721 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 DCAF6-201ENST00000312263 3186 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 TRIM4-203ENST00000355947 3383 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 MAGED4-201ENST00000375626 2495 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 FAM200A-202ENST00000449309 2480 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 VAMP4-201ENST00000236192 5159 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 GHET1-201ENST00000627071 1906 ntBASIC13.84□□□□□ -0.19
CCDC28BQ9BUN5 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms