Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 AMT-239ENST00000636865 1914 ntTSL 5 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 GZMB-202ENST00000382540 816 ntTSL 5 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 KLF2P4-201ENST00000451959 1225 ntBASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 MIR4741-201ENST00000579822 90 ntBASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 DRG2-220ENST00000583355 891 ntTSL 3 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 RPS24-214ENST00000613865 538 ntTSL 5 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 Z98259.2-201ENST00000641583 609 ntBASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 AC027612.1-201ENST00000445234 2395 ntBASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 SLC5A5-201ENST00000222248 3576 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 CCT8L1P-201ENST00000465400 1674 ntBASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 RIOK3-207ENST00000581585 1966 ntTSL 2 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 SYNPR-209ENST00000478300 2709 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
CLHC1Q8NHS4 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 SGSM1-206ENST00000610372 5991 ntTSL 5 BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 TNS2-203ENST00000379902 4737 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 MPV17-206ENST00000402722 827 ntTSL 3 BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 AC234783.1-201ENST00000441761 496 ntBASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 AC100827.2-201ENST00000563214 1194 ntBASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 AC124068.2-201ENST00000569473 1109 ntBASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 ARL16-210ENST00000574938 751 ntTSL 2 BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 MIR3197-201ENST00000582241 73 ntBASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 APOC4-201ENST00000591600 348 ntTSL 3 BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 PFAS-212ENST00000625942 396 ntTSL 5 BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 AC105233.6-201ENST00000642093 218 ntBASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 DYNC1I1-202ENST00000359388 2843 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 TNN-202ENST00000621086 4234 ntTSL 5 BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 RRBP1-202ENST00000360807 3727 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC13.68□□□□□ -0.22
CLHC1Q8NHS4 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms