Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC140113.1-201ENST00000603467 169 ntBASIC14.44□□□□□ -0.1
USP39Q53GS9 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC14.44□□□□□ -0.1
USP39Q53GS9 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC14.44□□□□□ -0.1
USP39Q53GS9 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC14.44□□□□□ -0.1
USP39Q53GS9 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
USP39Q53GS9 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
USP39Q53GS9 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC14.44□□□□□ -0.1
USP39Q53GS9 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC14.44□□□□□ -0.1
USP39Q53GS9 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC14.44□□□□□ -0.1
USP39Q53GS9 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC14.44□□□□□ -0.1
USP39Q53GS9 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC14.44□□□□□ -0.1
USP39Q53GS9 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
USP39Q53GS9 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
USP39Q53GS9 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
USP39Q53GS9 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
USP39Q53GS9 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
USP39Q53GS9 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
USP39Q53GS9 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC14.44□□□□□ -0.1
USP39Q53GS9 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC14.44□□□□□ -0.1
USP39Q53GS9 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
USP39Q53GS9 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
USP39Q53GS9 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USP39Q53GS9 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
USP39Q53GS9 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
USP39Q53GS9 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USP39Q53GS9 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC14.43□□□□□ -0.1
USP39Q53GS9 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
USP39Q53GS9 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USP39Q53GS9 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
USP39Q53GS9 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
USP39Q53GS9 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
USP39Q53GS9 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USP39Q53GS9 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
USP39Q53GS9 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USP39Q53GS9 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
USP39Q53GS9 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC14.43□□□□□ -0.1
USP39Q53GS9 AL357563.1-201ENST00000404728 395 ntBASIC14.43□□□□□ -0.1
USP39Q53GS9 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC14.43□□□□□ -0.1
USP39Q53GS9 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC14.43□□□□□ -0.1
USP39Q53GS9 AL139008.1-201ENST00000437894 228 ntBASIC14.43□□□□□ -0.1
USP39Q53GS9 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC14.43□□□□□ -0.1
USP39Q53GS9 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
USP39Q53GS9 OR5BD1P-201ENST00000532527 817 ntBASIC14.43□□□□□ -0.1
USP39Q53GS9 MIR2392-201ENST00000584881 84 ntBASIC14.43□□□□□ -0.1
USP39Q53GS9 SIGLEC22P-201ENST00000599104 714 ntBASIC14.43□□□□□ -0.1
USP39Q53GS9 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC14.43□□□□□ -0.1
USP39Q53GS9 RNF146-211ENST00000609447 607 ntTSL 4 BASIC14.43□□□□□ -0.1
USP39Q53GS9 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
USP39Q53GS9 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC14.43□□□□□ -0.1
USP39Q53GS9 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC14.43□□□□□ -0.1
USP39Q53GS9 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
USP39Q53GS9 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
USP39Q53GS9 C8orf49-201ENST00000525043 1968 ntBASIC14.43□□□□□ -0.1
USP39Q53GS9 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
USP39Q53GS9 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC14.43□□□□□ -0.1
USP39Q53GS9 AC006504.5-208ENST00000588784 2401 ntBASIC14.43□□□□□ -0.1
USP39Q53GS9 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC14.43□□□□□ -0.1
USP39Q53GS9 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USP39Q53GS9 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
USP39Q53GS9 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC14.43□□□□□ -0.1
USP39Q53GS9 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USP39Q53GS9 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USP39Q53GS9 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.43□□□□□ -0.1
USP39Q53GS9 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USP39Q53GS9 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC14.43□□□□□ -0.1
USP39Q53GS9 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
USP39Q53GS9 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
USP39Q53GS9 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP39Q53GS9 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC14.42□□□□□ -0.1
USP39Q53GS9 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP39Q53GS9 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC14.42□□□□□ -0.1
USP39Q53GS9 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP39Q53GS9 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC14.42□□□□□ -0.1
USP39Q53GS9 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP39Q53GS9 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP39Q53GS9 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP39Q53GS9 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP39Q53GS9 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
USP39Q53GS9 API5-208ENST00000531273 1868 ntTSL 2 BASIC14.42□□□□□ -0.1
USP39Q53GS9 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC14.42□□□□□ -0.1
USP39Q53GS9 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC14.42□□□□□ -0.1
USP39Q53GS9 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
USP39Q53GS9 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP39Q53GS9 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP39Q53GS9 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
USP39Q53GS9 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC14.42□□□□□ -0.1
USP39Q53GS9 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC14.42□□□□□ -0.1
USP39Q53GS9 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP39Q53GS9 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP39Q53GS9 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
USP39Q53GS9 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP39Q53GS9 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
USP39Q53GS9 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
USP39Q53GS9 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
USP39Q53GS9 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
USP39Q53GS9 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
USP39Q53GS9 AC234644.1-201ENST00000406065 370 ntBASIC14.42□□□□□ -0.1
USP39Q53GS9 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC14.42□□□□□ -0.1
USP39Q53GS9 GCSHP3-201ENST00000431120 391 ntBASIC14.42□□□□□ -0.1
USP39Q53GS9 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC14.42□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms