Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CR1P49238 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC12.54□□□□□ -0.4
CX3CR1P49238 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
CX3CR1P49238 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
CX3CR1P49238 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC12.54□□□□□ -0.4
CX3CR1P49238 GAPDHP21-201ENST00000450301 1010 ntBASIC12.54□□□□□ -0.4
CX3CR1P49238 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC12.54□□□□□ -0.4
CX3CR1P49238 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC12.54□□□□□ -0.4
CX3CR1P49238 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC12.54□□□□□ -0.4
CX3CR1P49238 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC12.54□□□□□ -0.4
CX3CR1P49238 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC12.54□□□□□ -0.4
CX3CR1P49238 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC12.54□□□□□ -0.4
CX3CR1P49238 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC12.54□□□□□ -0.4
CX3CR1P49238 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CR1P49238 EEF1DP1-201ENST00000585891 896 ntBASIC12.54□□□□□ -0.4
CX3CR1P49238 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
CX3CR1P49238 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC12.54□□□□□ -0.4
CX3CR1P49238 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CR1P49238 AL162426.1-201ENST00000624141 743 ntBASIC12.54□□□□□ -0.4
CX3CR1P49238 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC12.54□□□□□ -0.4
CX3CR1P49238 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC12.54□□□□□ -0.4
CX3CR1P49238 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CR1P49238 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CR1P49238 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
CX3CR1P49238 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC12.54□□□□□ -0.4
CX3CR1P49238 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CR1P49238 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CR1P49238 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CR1P49238 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CR1P49238 SESN3-203ENST00000536441 9558 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
CX3CR1P49238 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC12.54□□□□□ -0.4
CX3CR1P49238 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
CX3CR1P49238 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC12.54□□□□□ -0.4
CX3CR1P49238 ALAS1-204ENST00000469224 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CR1P49238 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CR1P49238 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CR1P49238 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CR1P49238 CACNA1G-220ENST00000507896 6600 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CR1P49238 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CR1P49238 CHD5-201ENST00000262450 9646 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CR1P49238 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC12.53□□□□□ -0.4
CX3CR1P49238 EP400NL-206ENST00000446190 3697 ntTSL 2 BASIC12.53□□□□□ -0.4
CX3CR1P49238 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CR1P49238 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CR1P49238 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CR1P49238 GOLGA8EP-201ENST00000530246 1959 ntBASIC12.53□□□□□ -0.4
CX3CR1P49238 ANKRD19P-201ENST00000338192 862 ntBASIC12.53□□□□□ -0.4
CX3CR1P49238 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CR1P49238 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC12.53□□□□□ -0.4
CX3CR1P49238 AL354877.1-201ENST00000424412 413 ntBASIC12.53□□□□□ -0.4
CX3CR1P49238 AC006122.1-201ENST00000493323 440 ntBASIC12.53□□□□□ -0.4
CX3CR1P49238 NAA50-208ENST00000497255 789 ntTSL 5 BASIC12.53□□□□□ -0.4
CX3CR1P49238 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC12.53□□□□□ -0.4
CX3CR1P49238 SNX29P1-201ENST00000548357 1007 ntBASIC12.53□□□□□ -0.4
CX3CR1P49238 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CR1P49238 ARL16-210ENST00000574938 751 ntTSL 2 BASIC12.53□□□□□ -0.4
CX3CR1P49238 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CR1P49238 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CR1P49238 AC133540.1-201ENST00000620845 1019 ntBASIC12.53□□□□□ -0.4
CX3CR1P49238 AC090386.2-201ENST00000623010 1039 ntBASIC12.53□□□□□ -0.4
CX3CR1P49238 PEAR1-202ENST00000338302 4970 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
CX3CR1P49238 ANKRD20A19P-202ENST00000442969 2796 ntTSL 2 BASIC12.53□□□□□ -0.4
CX3CR1P49238 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC12.53□□□□□ -0.4
CX3CR1P49238 CCT8L1P-201ENST00000465400 1674 ntBASIC12.53□□□□□ -0.4
CX3CR1P49238 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CR1P49238 AC144522.1-201ENST00000625111 1658 ntBASIC12.53□□□□□ -0.4
CX3CR1P49238 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC12.53□□□□□ -0.4
CX3CR1P49238 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CR1P49238 LINC01792-201ENST00000452787 2050 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CR1P49238 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CR1P49238 LMBRD2-201ENST00000296603 8185 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CR1P49238 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CR1P49238 MYO16-205ENST00000457511 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CR1P49238 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC12.53□□□□□ -0.4
CX3CR1P49238 MYO15B-236ENST00000633867 6323 ntTSL 5 BASIC12.53□□□□□ -0.4
CX3CR1P49238 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC12.53□□□□□ -0.4
CX3CR1P49238 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
CX3CR1P49238 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC12.53□□□□□ -0.4
CX3CR1P49238 TP73-207ENST00000378290 1831 ntTSL 2 BASIC12.53□□□□□ -0.4
CX3CR1P49238 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
CX3CR1P49238 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
CX3CR1P49238 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC12.53□□□□□ -0.4
CX3CR1P49238 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CR1P49238 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CR1P49238 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CR1P49238 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC12.52□□□□□ -0.4
CX3CR1P49238 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
CX3CR1P49238 PI4KA-201ENST00000255882 6752 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CX3CR1P49238 AC113189.2-201ENST00000575310 1975 ntTSL 2 BASIC12.52□□□□□ -0.4
CX3CR1P49238 AC020658.7-201ENST00000624274 2442 ntBASIC12.52□□□□□ -0.4
CX3CR1P49238 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
CX3CR1P49238 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.4
CX3CR1P49238 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC12.52□□□□□ -0.4
CX3CR1P49238 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
CX3CR1P49238 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.4
CX3CR1P49238 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
CX3CR1P49238 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC12.52□□□□□ -0.4
CX3CR1P49238 PKP1-203ENST00000367324 5384 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CX3CR1P49238 RPS6KA1-213ENST00000526792 2596 ntTSL 5 BASIC12.52□□□□□ -0.4
CX3CR1P49238 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms