Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HTTP42858 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC15.25■□□□□ 0.03
HTTP42858 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
HTTP42858 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HTTP42858 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HTTP42858 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC15.25■□□□□ 0.03
HTTP42858 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HTTP42858 VOPP1-204ENST00000418904 1317 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HTTP42858 PGAM1P10-201ENST00000402426 761 ntBASIC15.25■□□□□ 0.03
HTTP42858 AC053503.4-201ENST00000431827 224 ntTSL 5 BASIC15.25■□□□□ 0.03
HTTP42858 AC010163.1-201ENST00000434440 520 ntTSL 2 BASIC15.25■□□□□ 0.03
HTTP42858 AL662797.1-201ENST00000442852 799 ntTSL 3 BASIC15.25■□□□□ 0.03
HTTP42858 SEPT4-AS1-203ENST00000580769 1000 ntTSL 3 BASIC15.25■□□□□ 0.03
HTTP42858 NRSN2-206ENST00000608736 712 ntTSL 3 BASIC15.25■□□□□ 0.03
HTTP42858 FAM90A27P-201ENST00000593323 1370 ntBASIC15.25■□□□□ 0.03
HTTP42858 FAM90A28P-202ENST00000597191 1374 ntBASIC15.25■□□□□ 0.03
HTTP42858 UBE2A-206ENST00000625938 1381 ntTSL 2 BASIC15.25■□□□□ 0.03
HTTP42858 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
HTTP42858 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HTTP42858 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
HTTP42858 RCC2P5-201ENST00000492126 1487 ntBASIC15.25■□□□□ 0.03
HTTP42858 POR-201ENST00000394893 2532 ntTSL 5 BASIC15.25■□□□□ 0.03
HTTP42858 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
HTTP42858 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC15.25■□□□□ 0.03
HTTP42858 CYP2B6-202ENST00000593831 1426 ntTSL 2 BASIC15.25■□□□□ 0.03
HTTP42858 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
HTTP42858 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HTTP42858 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HTTP42858 GZMH-201ENST00000216338 909 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HTTP42858 Z92544.2-202ENST00000566927 407 ntTSL 3 BASIC15.25■□□□□ 0.03
HTTP42858 AL356740.1-201ENST00000602192 1297 ntBASIC15.25■□□□□ 0.03
HTTP42858 LINC02427-202ENST00000605270 1059 ntTSL 2 BASIC15.25■□□□□ 0.03
HTTP42858 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC15.25■□□□□ 0.03
HTTP42858 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
HTTP42858 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
HTTP42858 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HTTP42858 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC15.25■□□□□ 0.03
HTTP42858 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HTTP42858 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HTTP42858 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
HTTP42858 LINC00337-201ENST00000429480 1302 ntTSL 2 BASIC15.24■□□□□ 0.03
HTTP42858 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC15.24■□□□□ 0.03
HTTP42858 OLFML1-204ENST00000530135 1620 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
HTTP42858 HPGD-204ENST00000504433 1910 ntTSL 2 BASIC15.24■□□□□ 0.03
HTTP42858 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
HTTP42858 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HTTP42858 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HTTP42858 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HTTP42858 IMMP1L-201ENST00000278200 795 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
HTTP42858 MRPL55-210ENST00000366736 660 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
HTTP42858 RNA5SP407-201ENST00000410275 110 ntBASIC15.24■□□□□ 0.03
HTTP42858 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC15.24■□□□□ 0.03
HTTP42858 KRT18P15-201ENST00000458108 1291 ntBASIC15.24■□□□□ 0.03
HTTP42858 SNORA47-201ENST00000458862 138 ntBASIC15.24■□□□□ 0.03
HTTP42858 SMIM14-205ENST00000511809 830 ntTSL 2 BASIC15.24■□□□□ 0.03
HTTP42858 AC009646.2-202ENST00000524425 826 ntTSL 3 BASIC15.24■□□□□ 0.03
HTTP42858 AC010547.1-202ENST00000567341 230 ntTSL 2 BASIC15.24■□□□□ 0.03
HTTP42858 NAA60-236ENST00000577013 575 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HTTP42858 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC15.24■□□□□ 0.03
HTTP42858 AC008894.2-202ENST00000599676 1027 ntTSL 3 BASIC15.24■□□□□ 0.03
HTTP42858 AL033381.2-201ENST00000603854 732 ntBASIC15.24■□□□□ 0.03
HTTP42858 AC006273.1-201ENST00000606966 861 ntBASIC15.24■□□□□ 0.03
HTTP42858 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HTTP42858 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HTTP42858 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
HTTP42858 SLC26A5-201ENST00000306312 2689 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
HTTP42858 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HTTP42858 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
HTTP42858 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
HTTP42858 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
HTTP42858 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
HTTP42858 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HTTP42858 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
HTTP42858 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
HTTP42858 PSMB8-201ENST00000374881 1351 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HTTP42858 SLC25A5-201ENST00000317881 1274 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HTTP42858 AC011997.1-201ENST00000409845 1032 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HTTP42858 MORN2-205ENST00000410014 750 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
HTTP42858 AC005009.2-201ENST00000452471 687 ntTSL 3 BASIC15.24■□□□□ 0.03
HTTP42858 CCDC42-202ENST00000539522 1087 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HTTP42858 AIPL1-210ENST00000576307 1077 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HTTP42858 BLVRB-202ENST00000595483 649 ntTSL 2 BASIC15.24■□□□□ 0.03
HTTP42858 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HTTP42858 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
HTTP42858 SLC26A5-203ENST00000354356 2686 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
HTTP42858 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC15.24■□□□□ 0.03
HTTP42858 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HTTP42858 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
HTTP42858 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HTTP42858 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HTTP42858 SNORA30.1-201ENST00000363193 129 ntBASIC15.23■□□□□ 0.03
HTTP42858 SRSF9P1-201ENST00000399149 530 ntBASIC15.23■□□□□ 0.03
HTTP42858 AC159540.1-201ENST00000422600 555 ntTSL 4 BASIC15.23■□□□□ 0.03
HTTP42858 AL356289.1-203ENST00000439795 789 ntTSL 5 BASIC15.23■□□□□ 0.03
HTTP42858 AC139143.1-201ENST00000441772 1207 ntBASIC15.23■□□□□ 0.03
HTTP42858 LINC02328-202ENST00000554647 522 ntTSL 4 BASIC15.23■□□□□ 0.03
HTTP42858 MT1L-201ENST00000565768 411 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HTTP42858 MIR663AHG-218ENST00000598448 804 ntTSL 5 BASIC15.23■□□□□ 0.03
HTTP42858 UBA52-213ENST00000599551 707 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
HTTP42858 LINC00869-208ENST00000621156 737 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms