Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC12.4□□□□□ -0.42
COL8A1P27658 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL8A1P27658 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC12.4□□□□□ -0.42
COL8A1P27658 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC12.4□□□□□ -0.42
COL8A1P27658 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC12.4□□□□□ -0.42
COL8A1P27658 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC12.4□□□□□ -0.42
COL8A1P27658 AL365181.1-201ENST00000564032 1828 ntBASIC12.4□□□□□ -0.42
COL8A1P27658 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL8A1P27658 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
COL8A1P27658 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC12.4□□□□□ -0.42
COL8A1P27658 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
COL8A1P27658 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL8A1P27658 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL8A1P27658 JTB-202ENST00000356648 1040 ntTSL 2 BASIC12.4□□□□□ -0.42
COL8A1P27658 AL355478.1-201ENST00000431686 821 ntTSL 5 BASIC12.4□□□□□ -0.42
COL8A1P27658 CIDEC-205ENST00000443115 443 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
COL8A1P27658 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC12.4□□□□□ -0.42
COL8A1P27658 MIR2278-201ENST00000516344 96 ntBASIC12.4□□□□□ -0.42
COL8A1P27658 NAA40-205ENST00000539656 577 ntTSL 4 BASIC12.4□□□□□ -0.42
COL8A1P27658 AC078814.4-201ENST00000546650 327 ntBASIC12.4□□□□□ -0.42
COL8A1P27658 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC12.4□□□□□ -0.42
COL8A1P27658 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC12.4□□□□□ -0.42
COL8A1P27658 ANKRD26P1-203ENST00000569528 966 ntBASIC12.4□□□□□ -0.42
COL8A1P27658 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC12.4□□□□□ -0.42
COL8A1P27658 AL021707.6-201ENST00000609212 491 ntBASIC12.4□□□□□ -0.42
COL8A1P27658 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC12.4□□□□□ -0.42
COL8A1P27658 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL8A1P27658 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
COL8A1P27658 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
COL8A1P27658 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL8A1P27658 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL8A1P27658 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
COL8A1P27658 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL8A1P27658 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC12.4□□□□□ -0.42
COL8A1P27658 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL8A1P27658 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL8A1P27658 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
COL8A1P27658 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC12.4□□□□□ -0.43
COL8A1P27658 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC12.4□□□□□ -0.43
COL8A1P27658 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC12.4□□□□□ -0.43
COL8A1P27658 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.43
COL8A1P27658 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
COL8A1P27658 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
COL8A1P27658 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC12.39□□□□□ -0.43
COL8A1P27658 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC12.39□□□□□ -0.43
COL8A1P27658 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC12.39□□□□□ -0.43
COL8A1P27658 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC12.39□□□□□ -0.43
COL8A1P27658 SUCLA2-205ENST00000470760 1445 ntTSL 2 BASIC12.39□□□□□ -0.43
COL8A1P27658 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
COL8A1P27658 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 SSR4P1-203ENST00000599569 2260 ntBASIC12.39□□□□□ -0.43
COL8A1P27658 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
COL8A1P27658 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC12.39□□□□□ -0.43
COL8A1P27658 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 C20orf85-201ENST00000371168 803 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 AC231533.1-201ENST00000416061 925 ntTSL 3 BASIC12.39□□□□□ -0.43
COL8A1P27658 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC12.39□□□□□ -0.43
COL8A1P27658 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC12.39□□□□□ -0.43
COL8A1P27658 GALP-202ENST00000440823 889 ntTSL 5 BASIC12.39□□□□□ -0.43
COL8A1P27658 ST13P19-201ENST00000442505 1124 ntBASIC12.39□□□□□ -0.43
COL8A1P27658 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 DPY19L2P4-201ENST00000479881 442 ntBASIC12.39□□□□□ -0.43
COL8A1P27658 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC12.39□□□□□ -0.43
COL8A1P27658 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC12.39□□□□□ -0.43
COL8A1P27658 AC113347.2-201ENST00000512350 279 ntBASIC12.39□□□□□ -0.43
COL8A1P27658 AP000920.1-201ENST00000531824 344 ntBASIC12.39□□□□□ -0.43
COL8A1P27658 F11R-204ENST00000537746 1245 ntTSL 2 BASIC12.39□□□□□ -0.43
COL8A1P27658 INO80E-209ENST00000567254 625 ntTSL 2 BASIC12.39□□□□□ -0.43
COL8A1P27658 AL357143.1-203ENST00000639750 881 ntBASIC12.39□□□□□ -0.43
COL8A1P27658 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
COL8A1P27658 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
COL8A1P27658 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC12.39□□□□□ -0.43
COL8A1P27658 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
COL8A1P27658 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC12.39□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms