Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 Z98885.3-201ENST00000624882 1757 ntBASIC14.51□□□□□ -0.09
HMGA1P17096 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
HMGA1P17096 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC14.51□□□□□ -0.09
HMGA1P17096 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGA1P17096 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC14.51□□□□□ -0.09
HMGA1P17096 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGA1P17096 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC14.51□□□□□ -0.09
HMGA1P17096 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGA1P17096 EDN1-201ENST00000379375 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGA1P17096 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
HMGA1P17096 CLEC20A-202ENST00000623247 1491 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
HMGA1P17096 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGA1P17096 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
HMGA1P17096 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC14.5□□□□□ -0.09
HMGA1P17096 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGA1P17096 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC14.5□□□□□ -0.09
HMGA1P17096 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGA1P17096 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGA1P17096 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HMGA1P17096 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGA1P17096 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGA1P17096 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC14.5□□□□□ -0.09
HMGA1P17096 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
HMGA1P17096 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGA1P17096 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGA1P17096 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGA1P17096 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HMGA1P17096 OBSCN-AS1-201ENST00000295012 889 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGA1P17096 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC14.5□□□□□ -0.09
HMGA1P17096 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC14.5□□□□□ -0.09
HMGA1P17096 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HMGA1P17096 PSAT1P2-201ENST00000426107 972 ntBASIC14.5□□□□□ -0.09
HMGA1P17096 AC147651.3-201ENST00000429872 731 ntTSL 2 BASIC14.5□□□□□ -0.09
HMGA1P17096 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC14.5□□□□□ -0.09
HMGA1P17096 RN7SL494P-201ENST00000461517 304 ntBASIC14.5□□□□□ -0.09
HMGA1P17096 RN7SL582P-201ENST00000491078 279 ntBASIC14.5□□□□□ -0.09
HMGA1P17096 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC14.5□□□□□ -0.09
HMGA1P17096 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC14.5□□□□□ -0.09
HMGA1P17096 TREHP1-201ENST00000531328 465 ntBASIC14.5□□□□□ -0.09
HMGA1P17096 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC14.5□□□□□ -0.09
HMGA1P17096 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC14.5□□□□□ -0.09
HMGA1P17096 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HMGA1P17096 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC14.5□□□□□ -0.09
HMGA1P17096 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGA1P17096 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
HMGA1P17096 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGA1P17096 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGA1P17096 AC023908.3-201ENST00000564211 3047 ntBASIC14.5□□□□□ -0.09
HMGA1P17096 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
HMGA1P17096 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGA1P17096 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
HMGA1P17096 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGA1P17096 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGA1P17096 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
HMGA1P17096 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGA1P17096 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGA1P17096 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
HMGA1P17096 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
HMGA1P17096 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC14.5□□□□□ -0.09
HMGA1P17096 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
HMGA1P17096 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC14.5□□□□□ -0.09
HMGA1P17096 AL513477.1-201ENST00000602865 2407 ntBASIC14.5□□□□□ -0.09
HMGA1P17096 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC14.49□□□□□ -0.09
HMGA1P17096 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGA1P17096 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGA1P17096 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC14.49□□□□□ -0.09
HMGA1P17096 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
HMGA1P17096 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC14.49□□□□□ -0.09
HMGA1P17096 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGA1P17096 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGA1P17096 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC14.49□□□□□ -0.09
HMGA1P17096 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGA1P17096 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC14.49□□□□□ -0.09
HMGA1P17096 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGA1P17096 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC14.49□□□□□ -0.09
HMGA1P17096 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
HMGA1P17096 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
HMGA1P17096 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC14.49□□□□□ -0.09
HMGA1P17096 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC14.49□□□□□ -0.09
HMGA1P17096 AC005089.1-201ENST00000619486 2241 ntBASIC14.49□□□□□ -0.09
HMGA1P17096 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC14.49□□□□□ -0.09
HMGA1P17096 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC14.49□□□□□ -0.09
HMGA1P17096 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
HMGA1P17096 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
HMGA1P17096 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
HMGA1P17096 ABCD1P4-201ENST00000399687 604 ntBASIC14.49□□□□□ -0.09
HMGA1P17096 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC14.49□□□□□ -0.09
HMGA1P17096 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC14.49□□□□□ -0.09
HMGA1P17096 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC14.49□□□□□ -0.09
HMGA1P17096 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGA1P17096 PSMD4P1-201ENST00000433951 1109 ntBASIC14.49□□□□□ -0.09
HMGA1P17096 AC007279.1-201ENST00000448547 837 ntBASIC14.49□□□□□ -0.09
HMGA1P17096 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGA1P17096 LINC00892-203ENST00000454385 686 ntTSL 3 BASIC14.49□□□□□ -0.09
HMGA1P17096 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGA1P17096 AC090136.2-201ENST00000517809 420 ntBASIC14.49□□□□□ -0.09
HMGA1P17096 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
HMGA1P17096 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC14.49□□□□□ -0.09
HMGA1P17096 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
HMGA1P17096 MT3-202ENST00000561640 514 ntTSL 3 BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms