Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 AP003171.2-201ENST00000528208 925 ntBASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 AL512310.5-201ENST00000551999 515 ntBASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 AC021016.3-201ENST00000608367 477 ntBASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 AC132938.4-201ENST00000623835 848 ntBASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 AGGF1P10-201ENST00000635005 2191 ntBASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 DNAJB8-201ENST00000319153 2465 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 HTR3A-201ENST00000299961 1994 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 NAPB-202ENST00000398425 3824 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 TRGV9-201ENST00000444775 1735 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 PIP5K1A-204ENST00000409426 3737 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 TESMIN-204ENST00000443940 3495 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 PLA2G6-202ENST00000335539 3060 ntTSL 5 BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 AC015819.3-201ENST00000624305 2674 ntBASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 POM121L4P-202ENST00000427789 1891 ntBASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 GTF3C2-214ENST00000622534 1858 ntTSL 5 BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 AC007952.5-201ENST00000572818 1486 ntBASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC28BQ9BUN5 SAP30BP-202ENST00000355423 2439 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 SETD3-204ENST00000436070 2592 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 GTPBP4-202ENST00000360803 5075 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 C1S-202ENST00000360817 2635 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 CDC20B-202ENST00000322374 1679 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 HMGA1P1-201ENST00000415560 1062 ntBASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 FAM212B-AS1-201ENST00000430373 2131 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 METTL21AP1-201ENST00000438852 635 ntBASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 URGCP-206ENST00000446958 365 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 MIR4683-201ENST00000579659 81 ntBASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 LAMTOR5-AS1-209ENST00000597455 805 ntBASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 WFDC1-204ENST00000613603 549 ntBASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 AC093512.1-201ENST00000617969 520 ntBASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 ANKRD49-210ENST00000544612 2268 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 PLAT-201ENST00000220809 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 FCHSD1-209ENST00000522783 2477 ntTSL 5 BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 BAHD1-203ENST00000561234 4698 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 RBM15-203ENST00000602849 3368 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 SMAD1-215ENST00000515385 2085 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 LPO-204ENST00000543544 2350 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 PCDHA11-202ENST00000616325 3418 ntAPPRIS ALT2 BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 INTS3-204ENST00000435409 3597 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
CCDC28BQ9BUN5 TP73-211ENST00000604074 4806 ntTSL 5 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 KIAA1191-202ENST00000393725 2700 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 CDC20-201ENST00000310955 1675 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 PGM1-202ENST00000371084 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 CDK20-209ENST00000605159 1860 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CCDC28BQ9BUN5 C19orf12-209ENST00000623113 4242 ntTSL 2 BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms