Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 TRAIP-202ENST00000469027 1145 ntTSL 5 BASIC14.18□□□□□ -0.14
VCANP13611 AL136360.2-201ENST00000502636 581 ntTSL 4 BASIC14.18□□□□□ -0.14
VCANP13611 PTS-204ENST00000525803 625 ntTSL 3 BASIC14.18□□□□□ -0.14
VCANP13611 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
VCANP13611 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC14.18□□□□□ -0.14
VCANP13611 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
VCANP13611 WRB-202ENST00000380708 1464 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
VCANP13611 MYL2-201ENST00000228841 807 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VCANP13611 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
VCANP13611 TFAM-201ENST00000373895 973 ntTSL 2 BASIC14.17□□□□□ -0.14
VCANP13611 ACTBP14-201ENST00000411655 1089 ntBASIC14.17□□□□□ -0.14
VCANP13611 AC006449.2-201ENST00000618407 486 ntTSL 2 BASIC14.17□□□□□ -0.14
VCANP13611 MIR941-1-201ENST00000636396 72 ntBASIC14.17□□□□□ -0.14
VCANP13611 SP140L-205ENST00000458341 1727 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
VCANP13611 ASMT-203ENST00000381241 1388 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
VCANP13611 AC034205.3-201ENST00000603595 1376 ntBASIC14.17□□□□□ -0.14
VCANP13611 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC14.17□□□□□ -0.14
VCANP13611 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VCANP13611 KRT18P40-201ENST00000599859 1571 ntBASIC14.17□□□□□ -0.14
VCANP13611 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC14.17□□□□□ -0.14
VCANP13611 LY6G6F-201ENST00000375832 920 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VCANP13611 CSTF3-203ENST00000438862 1132 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
VCANP13611 RPSAP16-201ENST00000447583 821 ntBASIC14.17□□□□□ -0.14
VCANP13611 AL662899.2-201ENST00000503322 1266 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VCANP13611 SLC16A7-209ENST00000549465 537 ntTSL 3 BASIC14.17□□□□□ -0.14
VCANP13611 IFI27L1-205ENST00000554544 406 ntTSL 3 BASIC14.17□□□□□ -0.14
VCANP13611 AC015688.5-201ENST00000584605 603 ntAPPRIS P5 TSL 2 BASIC14.17□□□□□ -0.14
VCANP13611 LINC02427-202ENST00000605270 1059 ntTSL 2 BASIC14.17□□□□□ -0.14
VCANP13611 AL161937.2-201ENST00000615503 403 ntTSL 2 BASIC14.17□□□□□ -0.14
VCANP13611 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VCANP13611 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VCANP13611 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14.17□□□□□ -0.14
VCANP13611 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
VCANP13611 GLIPR1L2-201ENST00000320460 1729 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
VCANP13611 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC14.17□□□□□ -0.14
VCANP13611 AC087163.1-201ENST00000430089 381 ntBASIC14.17□□□□□ -0.14
VCANP13611 VEGFA-210ENST00000457104 414 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
VCANP13611 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC14.17□□□□□ -0.14
VCANP13611 RN7SL452P-201ENST00000482923 291 ntBASIC14.17□□□□□ -0.14
VCANP13611 RN7SL638P-201ENST00000494527 290 ntBASIC14.17□□□□□ -0.14
VCANP13611 VEGFA-218ENST00000518689 630 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
VCANP13611 WISP1-205ENST00000519433 545 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
VCANP13611 VEGFA-223ENST00000523125 541 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
VCANP13611 HAX1-211ENST00000532105 771 ntTSL 3 BASIC14.17□□□□□ -0.14
VCANP13611 SNHG21-205ENST00000561107 790 ntTSL 2 BASIC14.17□□□□□ -0.14
VCANP13611 AC123595.2-201ENST00000607854 549 ntTSL 4 BASIC14.17□□□□□ -0.14
VCANP13611 AC026120.2-201ENST00000617239 309 ntBASIC14.17□□□□□ -0.14
VCANP13611 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC14.17□□□□□ -0.14
VCANP13611 DCDC2B-201ENST00000409358 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VCANP13611 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VCANP13611 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VCANP13611 AL596257.1-201ENST00000641463 2694 ntBASIC14.17□□□□□ -0.14
VCANP13611 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
VCANP13611 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC14.17□□□□□ -0.14
VCANP13611 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
VCANP13611 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC14.16□□□□□ -0.14
VCANP13611 GLB1-203ENST00000399402 2512 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
VCANP13611 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
VCANP13611 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
VCANP13611 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC14.16□□□□□ -0.14
VCANP13611 ZNF451-205ENST00000370710 375 ntTSL 2 BASIC14.16□□□□□ -0.14
VCANP13611 LINC00271-202ENST00000436554 655 ntTSL 5 BASIC14.16□□□□□ -0.14
VCANP13611 CYP4F10P-201ENST00000589560 752 ntBASIC14.16□□□□□ -0.14
VCANP13611 AL591471.1-201ENST00000621855 229 ntBASIC14.16□□□□□ -0.14
VCANP13611 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VCANP13611 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VCANP13611 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VCANP13611 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
VCANP13611 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
VCANP13611 CNBP-207ENST00000502976 1626 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VCANP13611 LGALS4-201ENST00000307751 1535 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VCANP13611 GNLY-201ENST00000263863 846 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
VCANP13611 SH3BGR-202ENST00000380631 780 ntTSL 5 BASIC14.16□□□□□ -0.14
VCANP13611 PGK1P2-201ENST00000431702 1214 ntBASIC14.16□□□□□ -0.14
VCANP13611 NDFIP2-AS1-201ENST00000457171 431 ntTSL 3 BASIC14.16□□□□□ -0.14
VCANP13611 MYLK-AS1-203ENST00000485162 587 ntTSL 4 BASIC14.16□□□□□ -0.14
VCANP13611 SLC22A18AS-202ENST00000526203 664 ntAPPRIS P2 TSL 3 BASIC14.16□□□□□ -0.14
VCANP13611 AL355338.1-201ENST00000612598 913 ntTSL 2 BASIC14.16□□□□□ -0.14
VCANP13611 AC008622.3-201ENST00000621170 600 ntBASIC14.16□□□□□ -0.14
VCANP13611 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC14.16□□□□□ -0.14
VCANP13611 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VCANP13611 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
VCANP13611 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC14.16□□□□□ -0.14
VCANP13611 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
VCANP13611 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
VCANP13611 PUF60-204ENST00000456095 1736 ntTSL 5 BASIC14.16□□□□□ -0.14
VCANP13611 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VCANP13611 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
VCANP13611 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
VCANP13611 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC14.16□□□□□ -0.14
VCANP13611 OR6N1-201ENST00000335094 1027 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
VCANP13611 MRPS12-202ENST00000402029 929 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
VCANP13611 OR2W2P-201ENST00000406313 909 ntBASIC14.16□□□□□ -0.14
VCANP13611 AL358115.1-202ENST00000455257 675 ntTSL 3 BASIC14.16□□□□□ -0.14
VCANP13611 AC067942.2-201ENST00000506227 1268 ntBASIC14.16□□□□□ -0.14
VCANP13611 EEF1GP2-201ENST00000509352 1243 ntBASIC14.16□□□□□ -0.14
VCANP13611 LINC00514-203ENST00000573465 313 ntTSL 5 BASIC14.16□□□□□ -0.14
VCANP13611 AC132825.4-202ENST00000578792 434 ntBASIC14.16□□□□□ -0.14
VCANP13611 AC025682.1-203ENST00000584391 442 ntTSL 2 BASIC14.16□□□□□ -0.14
VCANP13611 AC010531.7-201ENST00000602665 465 ntTSL 3 BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms