Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC14.11□□□□□ -0.15
COL6A3P12111 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
COL6A3P12111 FAM238C-202ENST00000639963 1787 ntTSL 2 BASIC14.11□□□□□ -0.15
COL6A3P12111 ATF4P4-201ENST00000393544 1930 ntBASIC14.11□□□□□ -0.15
COL6A3P12111 TIPRL-201ENST00000367830 727 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A3P12111 CXXC1P1-202ENST00000489409 1212 ntBASIC14.11□□□□□ -0.15
COL6A3P12111 IL32-230ENST00000551122 733 ntAPPRIS ALT2 TSL 3 BASIC14.11□□□□□ -0.15
COL6A3P12111 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A3P12111 LINC00662-204ENST00000588027 562 ntTSL 5 BASIC14.11□□□□□ -0.15
COL6A3P12111 AL355353.1-201ENST00000604014 330 ntBASIC14.11□□□□□ -0.15
COL6A3P12111 AC020728.1-201ENST00000605749 1216 ntBASIC14.11□□□□□ -0.15
COL6A3P12111 PACRG-AS3-204ENST00000620150 567 ntTSL 4 BASIC14.11□□□□□ -0.15
COL6A3P12111 AC121247.1-201ENST00000622888 1232 ntBASIC14.11□□□□□ -0.15
COL6A3P12111 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A3P12111 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
COL6A3P12111 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A3P12111 TRNT1-202ENST00000280591 2180 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A3P12111 AC068760.1-201ENST00000493579 1953 ntBASIC14.11□□□□□ -0.15
COL6A3P12111 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
COL6A3P12111 KLHDC2-211ENST00000557247 1565 ntTSL 5 BASIC14.11□□□□□ -0.15
COL6A3P12111 KRT8P42-201ENST00000405771 1399 ntBASIC14.11□□□□□ -0.15
COL6A3P12111 SPATA22-203ENST00000397168 1457 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A3P12111 SPACA7-201ENST00000283550 795 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A3P12111 FOLR1-201ENST00000312293 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A3P12111 NDUFC1-206ENST00000505036 809 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A3P12111 AC018868.2-201ENST00000559655 1259 ntBASIC14.1□□□□□ -0.15
COL6A3P12111 AC131274.3-201ENST00000578745 1271 ntBASIC14.1□□□□□ -0.15
COL6A3P12111 AC005154.1-217ENST00000584199 581 ntTSL 4 BASIC14.1□□□□□ -0.15
COL6A3P12111 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
COL6A3P12111 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC14.1□□□□□ -0.15
COL6A3P12111 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A3P12111 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC14.1□□□□□ -0.15
COL6A3P12111 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A3P12111 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC14.1□□□□□ -0.15
COL6A3P12111 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC14.1□□□□□ -0.15
COL6A3P12111 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A3P12111 LYPD4-201ENST00000343055 1051 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A3P12111 AL356414.1-201ENST00000379526 686 ntTSL 3 BASIC14.1□□□□□ -0.15
COL6A3P12111 MTND6P9-201ENST00000458075 519 ntBASIC14.1□□□□□ -0.15
COL6A3P12111 AP003071.1-201ENST00000567925 622 ntTSL 3 BASIC14.1□□□□□ -0.15
COL6A3P12111 LYPD4-202ENST00000601246 1076 ntTSL 5 BASIC14.1□□□□□ -0.15
COL6A3P12111 NRSN2-206ENST00000608736 712 ntTSL 3 BASIC14.1□□□□□ -0.15
COL6A3P12111 AC004832.1-204ENST00000610737 1018 ntTSL 5 BASIC14.1□□□□□ -0.15
COL6A3P12111 ETV7-208ENST00000627426 1285 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A3P12111 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A3P12111 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC14.1□□□□□ -0.15
COL6A3P12111 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A3P12111 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A3P12111 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A3P12111 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A3P12111 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC14.1□□□□□ -0.15
COL6A3P12111 MEG8-221ENST00000636391 2155 ntTSL 5 BASIC14.1□□□□□ -0.15
COL6A3P12111 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A3P12111 SUCLG2P2-201ENST00000307241 1296 ntBASIC14.1□□□□□ -0.15
COL6A3P12111 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
COL6A3P12111 ZBED3-AS1-206ENST00000508401 582 ntTSL 2 BASIC14.1□□□□□ -0.15
COL6A3P12111 LYRM7-203ENST00000510516 604 ntTSL 2 BASIC14.1□□□□□ -0.15
COL6A3P12111 IFI27L1-211ENST00000557066 580 ntTSL 3 BASIC14.1□□□□□ -0.15
COL6A3P12111 AC103706.1-201ENST00000561761 679 ntBASIC14.1□□□□□ -0.15
COL6A3P12111 MAP3K14-205ENST00000617331 1049 ntTSL 5 BASIC14.1□□□□□ -0.15
COL6A3P12111 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL6A3P12111 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
COL6A3P12111 PPATP1-201ENST00000496669 1547 ntBASIC14.09□□□□□ -0.15
COL6A3P12111 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
COL6A3P12111 ECM1-203ENST00000369049 1925 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
COL6A3P12111 BARD1-214ENST00000620057 1456 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
COL6A3P12111 CHRNA1-208ENST00000636168 1862 ntTSL 5 BASIC14.09□□□□□ -0.15
COL6A3P12111 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
COL6A3P12111 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL6A3P12111 AC089987.1-201ENST00000551654 2209 ntBASIC14.09□□□□□ -0.15
COL6A3P12111 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC14.09□□□□□ -0.15
COL6A3P12111 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC14.09□□□□□ -0.15
COL6A3P12111 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC14.09□□□□□ -0.15
COL6A3P12111 KRT41P-201ENST00000393988 1293 ntBASIC14.09□□□□□ -0.15
COL6A3P12111 LINC00424-201ENST00000413124 654 ntTSL 4 BASIC14.09□□□□□ -0.15
COL6A3P12111 AC006967.2-201ENST00000426169 432 ntTSL 3 BASIC14.09□□□□□ -0.15
COL6A3P12111 RPL35P1-201ENST00000450819 370 ntBASIC14.09□□□□□ -0.15
COL6A3P12111 AC023886.1-202ENST00000504009 477 ntTSL 3 BASIC14.09□□□□□ -0.15
COL6A3P12111 AP005018.2-201ENST00000528464 822 ntBASIC14.09□□□□□ -0.15
COL6A3P12111 SIGLEC17P-201ENST00000593736 484 ntBASIC14.09□□□□□ -0.15
COL6A3P12111 FXYD3-207ENST00000604255 780 ntTSL 5 BASIC14.09□□□□□ -0.15
COL6A3P12111 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL6A3P12111 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL6A3P12111 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
COL6A3P12111 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC14.09□□□□□ -0.15
COL6A3P12111 CPPED1-203ENST00000433677 1993 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
COL6A3P12111 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
COL6A3P12111 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL6A3P12111 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
COL6A3P12111 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL6A3P12111 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC14.09□□□□□ -0.15
COL6A3P12111 FKBP4P1-201ENST00000507284 1347 ntBASIC14.09□□□□□ -0.15
COL6A3P12111 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC14.09□□□□□ -0.15
COL6A3P12111 PCTP-202ENST00000325214 1856 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
COL6A3P12111 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
COL6A3P12111 AC008080.1-201ENST00000311067 1058 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
COL6A3P12111 SCGB1C1-201ENST00000342878 431 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL6A3P12111 S100A6-202ENST00000368720 673 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
COL6A3P12111 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
COL6A3P12111 FHIT-205ENST00000476844 1033 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms