Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC12.17□□□□□ -0.46
SDCBPO00560 PUDPP3-201ENST00000445368 636 ntBASIC12.17□□□□□ -0.46
SDCBPO00560 KRT17P7-201ENST00000451704 1104 ntBASIC12.17□□□□□ -0.46
SDCBPO00560 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 FTH1P14-201ENST00000482930 551 ntBASIC12.17□□□□□ -0.46
SDCBPO00560 CDC23-208ENST00000505120 455 ntTSL 3 BASIC12.17□□□□□ -0.46
SDCBPO00560 AP005018.1-201ENST00000525475 301 ntBASIC12.17□□□□□ -0.46
SDCBPO00560 FUZ-207ENST00000526575 482 ntTSL 4 BASIC12.17□□□□□ -0.46
SDCBPO00560 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC12.17□□□□□ -0.46
SDCBPO00560 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC12.17□□□□□ -0.46
SDCBPO00560 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC12.17□□□□□ -0.46
SDCBPO00560 APRT-204ENST00000563655 709 ntTSL 5 BASIC12.17□□□□□ -0.46
SDCBPO00560 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC12.17□□□□□ -0.46
SDCBPO00560 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC12.17□□□□□ -0.46
SDCBPO00560 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 KLK3-207ENST00000595952 969 ntTSL 3 BASIC12.17□□□□□ -0.46
SDCBPO00560 BTNL10-201ENST00000595971 695 ntBASIC12.17□□□□□ -0.46
SDCBPO00560 BX088702.1-201ENST00000610784 235 ntBASIC12.17□□□□□ -0.46
SDCBPO00560 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC12.17□□□□□ -0.46
SDCBPO00560 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC12.17□□□□□ -0.46
SDCBPO00560 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC12.17□□□□□ -0.46
SDCBPO00560 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC12.17□□□□□ -0.46
SDCBPO00560 DHX30-201ENST00000348968 3994 ntTSL 5 BASIC12.17□□□□□ -0.46
SDCBPO00560 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC12.17□□□□□ -0.46
SDCBPO00560 MEGF11-201ENST00000288745 5707 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC12.17□□□□□ -0.46
SDCBPO00560 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
SDCBPO00560 AC125807.2-201ENST00000513358 3514 ntBASIC12.17□□□□□ -0.46
SDCBPO00560 PIK3R1-213ENST00000521657 3891 ntAPPRIS P1 TSL 5 BASIC12.17□□□□□ -0.46
SDCBPO00560 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
SDCBPO00560 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC12.17□□□□□ -0.46
SDCBPO00560 AC093899.2-201ENST00000513963 1935 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
SDCBPO00560 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC12.17□□□□□ -0.46
SDCBPO00560 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC12.17□□□□□ -0.46
SDCBPO00560 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC12.17□□□□□ -0.46
SDCBPO00560 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 NTSR1-201ENST00000370501 4132 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
SDCBPO00560 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC12.17□□□□□ -0.46
SDCBPO00560 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC12.17□□□□□ -0.46
SDCBPO00560 DNAJA4-203ENST00000394855 3245 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC12.16□□□□□ -0.46
SDCBPO00560 NPAS4-201ENST00000311034 3303 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 CAD-202ENST00000403525 6900 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC12.16□□□□□ -0.46
SDCBPO00560 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 CCT6P3-201ENST00000419314 3702 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC12.16□□□□□ -0.46
SDCBPO00560 SLC22A2-202ENST00000366953 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC12.16□□□□□ -0.46
SDCBPO00560 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC12.16□□□□□ -0.46
SDCBPO00560 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC12.16□□□□□ -0.46
SDCBPO00560 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC12.16□□□□□ -0.46
SDCBPO00560 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC12.16□□□□□ -0.46
SDCBPO00560 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC12.16□□□□□ -0.46
SDCBPO00560 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC12.16□□□□□ -0.46
SDCBPO00560 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 CECR7-204ENST00000609932 568 ntTSL 2 BASIC12.16□□□□□ -0.46
SDCBPO00560 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC12.16□□□□□ -0.46
SDCBPO00560 LARP4-220ENST00000615080 856 ntTSL 5 BASIC12.16□□□□□ -0.46
SDCBPO00560 BAP1-211ENST00000615113 489 ntBASIC12.16□□□□□ -0.46
SDCBPO00560 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC12.16□□□□□ -0.46
SDCBPO00560 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC12.16□□□□□ -0.46
SDCBPO00560 NLRP2-204ENST00000391721 3420 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
SDCBPO00560 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC12.16□□□□□ -0.46
SDCBPO00560 SLC1A1-201ENST00000262352 3722 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
SDCBPO00560 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 POLM-201ENST00000242248 2631 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 CELSR1-201ENST00000262738 11389 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 CEP68-202ENST00000377990 5847 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
SDCBPO00560 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC12.16□□□□□ -0.46
SDCBPO00560 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 136.7 ms