Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
COL4A3BPQ9Y5P4 AC016629.1-201ENST00000596579 586 ntBASIC15.91■□□□□ 0.14
COL4A3BPQ9Y5P4 HCG18-245ENST00000602550 559 ntTSL 4 BASIC15.91■□□□□ 0.14
COL4A3BPQ9Y5P4 LINC01783-202ENST00000614408 828 ntBASIC15.91■□□□□ 0.14
COL4A3BPQ9Y5P4 BX284668.2-205ENST00000619677 828 ntBASIC15.91■□□□□ 0.14
COL4A3BPQ9Y5P4 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL4A3BPQ9Y5P4 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL4A3BPQ9Y5P4 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL4A3BPQ9Y5P4 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL4A3BPQ9Y5P4 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL4A3BPQ9Y5P4 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC15.91■□□□□ 0.14
COL4A3BPQ9Y5P4 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL4A3BPQ9Y5P4 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC15.91■□□□□ 0.14
COL4A3BPQ9Y5P4 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL4A3BPQ9Y5P4 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC15.91■□□□□ 0.14
COL4A3BPQ9Y5P4 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL4A3BPQ9Y5P4 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL4A3BPQ9Y5P4 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL4A3BPQ9Y5P4 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL4A3BPQ9Y5P4 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL4A3BPQ9Y5P4 AC007952.5-201ENST00000572818 1486 ntBASIC15.91■□□□□ 0.14
COL4A3BPQ9Y5P4 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 AC023794.5-201ENST00000564380 2157 ntBASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 OR2K2-202ENST00000374428 1038 ntBASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 AC026320.2-201ENST00000434379 478 ntBASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 IGLV3-15-201ENST00000518356 244 ntBASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 FOS-206ENST00000555347 1280 ntTSL 2 BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 PHBP15-201ENST00000574228 665 ntBASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC15.9■□□□□ 0.14
COL4A3BPQ9Y5P4 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.14
COL4A3BPQ9Y5P4 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 FAM90A2P-201ENST00000511144 1395 ntBASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 FAM90A25P-201ENST00000528404 1395 ntBASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 PRIMA1-201ENST00000316227 1080 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 EEF1DP6-201ENST00000449232 372 ntBASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 DUX4L50-201ENST00000455245 715 ntBASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 RN7SL277P-201ENST00000481521 288 ntBASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 RN7SL67P-201ENST00000492147 296 ntBASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL4A3BPQ9Y5P4 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms