Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 RPL7P3-201ENST00000441388 714 ntBASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 AC097103.2-201ENST00000504670 602 ntTSL 2 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 RBM8B-201ENST00000555532 525 ntBASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 ORC6-206ENST00000568364 888 ntTSL 5 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 MIR4783-201ENST00000580343 82 ntBASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 REXO1L6P-201ENST00000603433 1515 ntBASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 CRY2-202ENST00000443527 4203 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 ITGB4-202ENST00000449880 5689 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
CLHC1Q8NHS4 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 GNB1L-201ENST00000329517 6706 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 GTF2IRD2B-203ENST00000472837 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 NCK2-206ENST00000522586 490 ntTSL 5 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 AP000812.2-201ENST00000538934 718 ntBASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 PCDHA6-201ENST00000378126 3267 ntBASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 AC068760.1-201ENST00000493579 1953 ntBASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 AL023775.1-201ENST00000454907 1746 ntBASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 LAP3P2-201ENST00000454686 1454 ntBASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 ZNF202-206ENST00000529691 3384 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
CLHC1Q8NHS4 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 GLB1L-201ENST00000295759 2745 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 IRS1-201ENST00000305123 9705 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
CLHC1Q8NHS4 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms