Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC11.41□□□□□ -0.58
VPS13CQ709C8 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC11.41□□□□□ -0.58
VPS13CQ709C8 AF186996.6-201ENST00000485294 149 ntBASIC11.41□□□□□ -0.58
VPS13CQ709C8 AL662899.2-201ENST00000503322 1266 ntAPPRIS P1 TSL 1 (best) BASIC11.41□□□□□ -0.58
VPS13CQ709C8 MIR4640-201ENST00000581824 90 ntBASIC11.41□□□□□ -0.58
VPS13CQ709C8 AC123912.6-201ENST00000612657 315 ntBASIC11.41□□□□□ -0.58
VPS13CQ709C8 AC008993.3-201ENST00000633603 631 ntTSL 5 BASIC11.41□□□□□ -0.58
VPS13CQ709C8 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC11.41□□□□□ -0.58
VPS13CQ709C8 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC11.4□□□□□ -0.58
VPS13CQ709C8 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC11.4□□□□□ -0.58
VPS13CQ709C8 SNHG14-201ENST00000414175 610 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
VPS13CQ709C8 CHIC2-204ENST00000512964 711 ntTSL 5 BASIC11.4□□□□□ -0.58
VPS13CQ709C8 PDCD2-205ENST00000537445 1114 ntTSL 3 BASIC11.4□□□□□ -0.58
VPS13CQ709C8 ADSSL1-208ENST00000555674 520 ntTSL 3 BASIC11.4□□□□□ -0.58
VPS13CQ709C8 AC090907.2-201ENST00000559857 720 ntTSL 3 BASIC11.4□□□□□ -0.58
VPS13CQ709C8 CD276-217ENST00000564751 951 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
VPS13CQ709C8 AC022098.2-201ENST00000590528 518 ntTSL 4 BASIC11.4□□□□□ -0.58
VPS13CQ709C8 BX322562.1-201ENST00000617004 561 ntBASIC11.4□□□□□ -0.58
VPS13CQ709C8 ADH1B-207ENST00000639454 1210 ntTSL 5 BASIC11.4□□□□□ -0.58
VPS13CQ709C8 SFTPA2-205ENST00000640627 195 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
VPS13CQ709C8 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC11.4□□□□□ -0.58
VPS13CQ709C8 ECI2-202ENST00000380118 1407 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
VPS13CQ709C8 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
VPS13CQ709C8 CHCHD7-218ENST00000523975 1805 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
VPS13CQ709C8 FAM27E3-201ENST00000418795 1593 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
VPS13CQ709C8 ZNF143-202ENST00000396597 1954 ntTSL 2 BASIC11.4□□□□□ -0.58
VPS13CQ709C8 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
VPS13CQ709C8 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
VPS13CQ709C8 GTF2A1L-201ENST00000403751 1639 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
VPS13CQ709C8 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC11.4□□□□□ -0.58
VPS13CQ709C8 SFPQP1-201ENST00000446621 1786 ntBASIC11.4□□□□□ -0.58
VPS13CQ709C8 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
VPS13CQ709C8 PDHB-210ENST00000485460 1397 ntTSL 2 BASIC11.4□□□□□ -0.58
VPS13CQ709C8 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC11.4□□□□□ -0.58
VPS13CQ709C8 AC019294.4-201ENST00000561777 2905 ntBASIC11.4□□□□□ -0.58
VPS13CQ709C8 ZCCHC7-201ENST00000322831 1219 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
VPS13CQ709C8 OR2T27-201ENST00000344889 954 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
VPS13CQ709C8 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC11.4□□□□□ -0.58
VPS13CQ709C8 SLC5A4-AS1-201ENST00000434942 876 ntTSL 3 BASIC11.4□□□□□ -0.58
VPS13CQ709C8 KCCAT198-201ENST00000549251 549 ntTSL 4 BASIC11.4□□□□□ -0.58
VPS13CQ709C8 AL080250.1-203ENST00000607799 747 ntTSL 2 BASIC11.4□□□□□ -0.58
VPS13CQ709C8 CHD2-218ENST00000629346 1249 ntTSL 5 BASIC11.4□□□□□ -0.58
VPS13CQ709C8 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
VPS13CQ709C8 DMC1-207ENST00000616615 1595 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
VPS13CQ709C8 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
VPS13CQ709C8 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
VPS13CQ709C8 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC11.4□□□□□ -0.58
VPS13CQ709C8 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
VPS13CQ709C8 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC11.4□□□□□ -0.58
VPS13CQ709C8 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
VPS13CQ709C8 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
VPS13CQ709C8 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
VPS13CQ709C8 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC11.4□□□□□ -0.58
VPS13CQ709C8 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
VPS13CQ709C8 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
VPS13CQ709C8 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
VPS13CQ709C8 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC11.4□□□□□ -0.59
VPS13CQ709C8 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.59
VPS13CQ709C8 OR51B5-201ENST00000300773 939 ntAPPRIS P1 BASIC11.4□□□□□ -0.59
VPS13CQ709C8 MIR339-201ENST00000362153 94 ntBASIC11.4□□□□□ -0.59
VPS13CQ709C8 BTF3-202ENST00000380591 1237 ntTSL 1 (best) BASIC11.4□□□□□ -0.59
VPS13CQ709C8 AC026884.1-201ENST00000418296 457 ntBASIC11.4□□□□□ -0.59
VPS13CQ709C8 GIMAP6-202ENST00000493969 876 ntTSL 2 BASIC11.4□□□□□ -0.59
VPS13CQ709C8 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC11.4□□□□□ -0.59
VPS13CQ709C8 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
VPS13CQ709C8 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
VPS13CQ709C8 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC11.39□□□□□ -0.59
VPS13CQ709C8 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC11.39□□□□□ -0.59
VPS13CQ709C8 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC11.39□□□□□ -0.59
VPS13CQ709C8 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
VPS13CQ709C8 AC022532.1-201ENST00000624563 1728 ntBASIC11.39□□□□□ -0.59
VPS13CQ709C8 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
VPS13CQ709C8 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
VPS13CQ709C8 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC11.39□□□□□ -0.59
VPS13CQ709C8 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
VPS13CQ709C8 ZMAT5-201ENST00000344318 899 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
VPS13CQ709C8 CMTM5-204ENST00000382809 378 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
VPS13CQ709C8 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC11.39□□□□□ -0.59
VPS13CQ709C8 NAV2-AS2-201ENST00000533767 782 ntTSL 2 BASIC11.39□□□□□ -0.59
VPS13CQ709C8 MT1X-202ENST00000562939 538 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
VPS13CQ709C8 AC026461.1-201ENST00000567563 551 ntTSL 4 BASIC11.39□□□□□ -0.59
VPS13CQ709C8 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC11.39□□□□□ -0.59
VPS13CQ709C8 CPA1-207ENST00000484324 1303 ntTSL 5 BASIC11.39□□□□□ -0.59
VPS13CQ709C8 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
VPS13CQ709C8 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC11.39□□□□□ -0.59
VPS13CQ709C8 ZNF582-201ENST00000301310 2824 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
VPS13CQ709C8 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC11.39□□□□□ -0.59
VPS13CQ709C8 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
VPS13CQ709C8 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
VPS13CQ709C8 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
VPS13CQ709C8 WARS-203ENST00000358655 2466 ntTSL 2 BASIC11.39□□□□□ -0.59
VPS13CQ709C8 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
VPS13CQ709C8 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
VPS13CQ709C8 SETMAR-205ENST00000425863 1657 ntTSL 2 BASIC11.39□□□□□ -0.59
VPS13CQ709C8 AL121656.1-201ENST00000440786 482 ntTSL 5 BASIC11.39□□□□□ -0.59
VPS13CQ709C8 RN7SL351P-201ENST00000469306 248 ntBASIC11.39□□□□□ -0.59
VPS13CQ709C8 AC010202.1-201ENST00000551181 405 ntBASIC11.39□□□□□ -0.59
VPS13CQ709C8 IP6K2-211ENST00000432678 1309 ntTSL 2 BASIC11.39□□□□□ -0.59
VPS13CQ709C8 TUBB4AP1-201ENST00000450755 1325 ntBASIC11.39□□□□□ -0.59
VPS13CQ709C8 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms