Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC15.1■□□□□ 0.01
LIG3P49916 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC15.1■□□□□ 0.01
LIG3P49916 ELOA2-202ENST00000620522 1641 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
LIG3P49916 C15orf39-202ENST00000394987 4430 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
LIG3P49916 AC022497.1-201ENST00000624916 3691 ntBASIC15.1■□□□□ 0.01
LIG3P49916 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LIG3P49916 FAM168B-202ENST00000409185 5285 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIG3P49916 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC15.09■□□□□ 0.01
LIG3P49916 GSN-209ENST00000449733 2702 ntTSL 2 BASIC15.09■□□□□ 0.01
LIG3P49916 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LIG3P49916 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIG3P49916 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIG3P49916 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC15.09■□□□□ 0.01
LIG3P49916 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC15.09■□□□□ 0.01
LIG3P49916 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
LIG3P49916 SLC4A8-205ENST00000535225 2262 ntTSL 2 BASIC15.09■□□□□ 0.01
LIG3P49916 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC15.09■□□□□ 0.01
LIG3P49916 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LIG3P49916 C8B-201ENST00000371237 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIG3P49916 PHF21B-201ENST00000313237 3671 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LIG3P49916 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
LIG3P49916 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIG3P49916 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
LIG3P49916 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIG3P49916 BCL2-201ENST00000333681 3209 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIG3P49916 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIG3P49916 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LIG3P49916 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC15.09■□□□□ 0.01
LIG3P49916 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC15.09■□□□□ 0.01
LIG3P49916 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIG3P49916 FAM8A4P-201ENST00000435433 1213 ntBASIC15.09■□□□□ 0.01
LIG3P49916 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
LIG3P49916 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC15.09■□□□□ 0.01
LIG3P49916 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LIG3P49916 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC15.09■□□□□ 0.01
LIG3P49916 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC15.09■□□□□ 0.01
LIG3P49916 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC15.09■□□□□ 0.01
LIG3P49916 DUX4L45-201ENST00000566406 1057 ntBASIC15.09■□□□□ 0.01
LIG3P49916 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIG3P49916 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC15.09■□□□□ 0.01
LIG3P49916 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC15.09■□□□□ 0.01
LIG3P49916 AC009542.2-202ENST00000619004 1067 ntBASIC15.09■□□□□ 0.01
LIG3P49916 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LIG3P49916 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC15.09■□□□□ 0.01
LIG3P49916 COL1A2-213ENST00000620463 4523 ntTSL 5 BASIC15.09■□□□□ 0.01
LIG3P49916 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
LIG3P49916 NCF2-201ENST00000367535 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIG3P49916 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC15.09■□□□□ 0.01
LIG3P49916 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
LIG3P49916 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
LIG3P49916 NRXN1-259ENST00000637511 3651 ntTSL 5 BASIC15.08■□□□□ 0.01
LIG3P49916 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC15.08■□□□□ 0.01
LIG3P49916 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
LIG3P49916 AC090505.1-201ENST00000430515 1834 ntBASIC15.08■□□□□ 0.01
LIG3P49916 POTEE-201ENST00000356920 4159 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
LIG3P49916 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
LIG3P49916 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC15.08■□□□□ 0.01
LIG3P49916 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
LIG3P49916 FTO-214ENST00000636218 2227 ntTSL 5 BASIC15.08■□□□□ 0
LIG3P49916 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC15.08■□□□□ 0
LIG3P49916 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC15.08■□□□□ 0
LIG3P49916 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC15.08■□□□□ 0
LIG3P49916 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC15.08■□□□□ 0
LIG3P49916 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LIG3P49916 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0
LIG3P49916 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC15.08■□□□□ 0
LIG3P49916 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC15.08■□□□□ 0
LIG3P49916 OLR1-203ENST00000432556 950 ntTSL 2 BASIC15.08■□□□□ 0
LIG3P49916 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC15.08■□□□□ 0
LIG3P49916 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC15.08■□□□□ 0
LIG3P49916 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC15.08■□□□□ 0
LIG3P49916 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC15.08■□□□□ 0
LIG3P49916 RPS15-202ENST00000585665 467 ntTSL 3 BASIC15.08■□□□□ 0
LIG3P49916 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
LIG3P49916 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
LIG3P49916 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC15.08■□□□□ 0
LIG3P49916 C3orf18-206ENST00000449241 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LIG3P49916 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LIG3P49916 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC15.08■□□□□ 0
LIG3P49916 ITGB2-205ENST00000397850 3178 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
LIG3P49916 NOX5-202ENST00000388866 2804 ntTSL 1 (best) BASIC15.08■□□□□ 0
LIG3P49916 ROPN1B-202ENST00000504401 2050 ntTSL 1 (best) BASIC15.08■□□□□ 0
LIG3P49916 CLUHP2-201ENST00000426660 1303 ntBASIC15.08■□□□□ 0
LIG3P49916 RBM10-201ENST00000329236 3201 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
LIG3P49916 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
LIG3P49916 RAB37-202ENST00000392610 2858 ntTSL 3 BASIC15.08■□□□□ 0
LIG3P49916 PTK2-202ENST00000395218 4415 ntTSL 5 BASIC15.08■□□□□ 0
LIG3P49916 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
LIG3P49916 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LIG3P49916 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC15.08■□□□□ 0
LIG3P49916 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
LIG3P49916 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC15.08■□□□□ 0
LIG3P49916 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
LIG3P49916 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
LIG3P49916 BAK1-203ENST00000442998 2212 ntTSL 1 (best) BASIC15.08■□□□□ 0
LIG3P49916 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC15.08■□□□□ 0
LIG3P49916 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
LIG3P49916 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC15.08■□□□□ 0
LIG3P49916 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 84 ms