Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 F10-203ENST00000409306 1450 ntTSL 3 BASIC12.43□□□□□ -0.42
COL8A1P27658 LCN6-201ENST00000341206 717 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 NCR1-204ENST00000357397 594 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
COL8A1P27658 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 PRR23A-201ENST00000383163 801 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
COL8A1P27658 SNORA57-201ENST00000383870 149 ntBASIC12.43□□□□□ -0.42
COL8A1P27658 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
COL8A1P27658 HCG24-202ENST00000414398 717 ntTSL 3 BASIC12.43□□□□□ -0.42
COL8A1P27658 AC098657.1-201ENST00000416270 1135 ntBASIC12.43□□□□□ -0.42
COL8A1P27658 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC12.43□□□□□ -0.42
COL8A1P27658 FAM197Y6-201ENST00000420524 766 ntBASIC12.43□□□□□ -0.42
COL8A1P27658 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC12.43□□□□□ -0.42
COL8A1P27658 SEPHS2P1-201ENST00000511618 1162 ntBASIC12.43□□□□□ -0.42
COL8A1P27658 CTBP2P6-201ENST00000526402 1229 ntBASIC12.43□□□□□ -0.42
COL8A1P27658 AAMDC-207ENST00000527134 693 ntTSL 3 BASIC12.43□□□□□ -0.42
COL8A1P27658 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC12.43□□□□□ -0.42
COL8A1P27658 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC12.43□□□□□ -0.42
COL8A1P27658 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC12.43□□□□□ -0.42
COL8A1P27658 CTSH-218ENST00000615999 972 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC12.43□□□□□ -0.42
COL8A1P27658 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC12.43□□□□□ -0.42
COL8A1P27658 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC12.43□□□□□ -0.42
COL8A1P27658 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
COL8A1P27658 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC12.43□□□□□ -0.42
COL8A1P27658 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC12.43□□□□□ -0.42
COL8A1P27658 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
COL8A1P27658 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC12.43□□□□□ -0.42
COL8A1P27658 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC12.43□□□□□ -0.42
COL8A1P27658 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC12.43□□□□□ -0.42
COL8A1P27658 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC12.43□□□□□ -0.42
COL8A1P27658 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 MSANTD2P1-201ENST00000445341 1368 ntBASIC12.43□□□□□ -0.42
COL8A1P27658 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
COL8A1P27658 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL8A1P27658 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
COL8A1P27658 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL8A1P27658 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
COL8A1P27658 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC12.42□□□□□ -0.42
COL8A1P27658 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL8A1P27658 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
COL8A1P27658 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL8A1P27658 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL8A1P27658 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC12.42□□□□□ -0.42
COL8A1P27658 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC12.42□□□□□ -0.42
COL8A1P27658 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC12.42□□□□□ -0.42
COL8A1P27658 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC12.42□□□□□ -0.42
COL8A1P27658 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL8A1P27658 CHRNA1-205ENST00000409542 1460 ntTSL 3 BASIC12.42□□□□□ -0.42
COL8A1P27658 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC12.42□□□□□ -0.42
COL8A1P27658 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL8A1P27658 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL8A1P27658 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC12.42□□□□□ -0.42
COL8A1P27658 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
COL8A1P27658 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
COL8A1P27658 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
COL8A1P27658 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC12.42□□□□□ -0.42
COL8A1P27658 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC12.42□□□□□ -0.42
COL8A1P27658 OR7E115P-201ENST00000382617 1024 ntBASIC12.42□□□□□ -0.42
COL8A1P27658 GGTLC4P-201ENST00000402176 664 ntBASIC12.42□□□□□ -0.42
COL8A1P27658 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
COL8A1P27658 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC12.42□□□□□ -0.42
COL8A1P27658 LINC01983-201ENST00000413586 574 ntTSL 2 BASIC12.42□□□□□ -0.42
COL8A1P27658 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC12.42□□□□□ -0.42
COL8A1P27658 KRT18P4-201ENST00000422599 1288 ntBASIC12.42□□□□□ -0.42
COL8A1P27658 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC12.42□□□□□ -0.42
COL8A1P27658 LINC01502-203ENST00000447907 880 ntTSL 3 BASIC12.42□□□□□ -0.42
COL8A1P27658 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC12.42□□□□□ -0.42
COL8A1P27658 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC12.42□□□□□ -0.42
COL8A1P27658 PEBP1P3-201ENST00000455475 548 ntBASIC12.42□□□□□ -0.42
COL8A1P27658 RPS18P9-201ENST00000482817 460 ntBASIC12.42□□□□□ -0.42
COL8A1P27658 TIMMDC1-207ENST00000493694 710 ntTSL 2 BASIC12.42□□□□□ -0.42
COL8A1P27658 AC015795.2-201ENST00000512720 575 ntTSL 3 BASIC12.42□□□□□ -0.42
COL8A1P27658 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC12.42□□□□□ -0.42
COL8A1P27658 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
COL8A1P27658 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC12.42□□□□□ -0.42
COL8A1P27658 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC12.42□□□□□ -0.42
COL8A1P27658 AC142086.5-202ENST00000562500 217 ntBASIC12.42□□□□□ -0.42
COL8A1P27658 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC12.42□□□□□ -0.42
COL8A1P27658 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC12.42□□□□□ -0.42
COL8A1P27658 COX5A-205ENST00000568517 582 ntTSL 3 BASIC12.42□□□□□ -0.42
COL8A1P27658 AP001542.1-201ENST00000591314 200 ntBASIC12.42□□□□□ -0.42
COL8A1P27658 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC12.42□□□□□ -0.42
COL8A1P27658 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC12.42□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 439.6 ms