Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL5A1P20908 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL5A1P20908 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL5A1P20908 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL5A1P20908 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL5A1P20908 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
COL5A1P20908 MIF4GD-201ENST00000245551 1358 ntTSL 3 BASIC13.23□□□□□ -0.29
COL5A1P20908 DMC1-207ENST00000616615 1595 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL5A1P20908 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL5A1P20908 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
COL5A1P20908 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL5A1P20908 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC13.23□□□□□ -0.29
COL5A1P20908 AC089987.1-201ENST00000551654 2209 ntBASIC13.23□□□□□ -0.29
COL5A1P20908 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL5A1P20908 AC004997.1-205ENST00000447976 1851 ntTSL 2 BASIC13.23□□□□□ -0.29
COL5A1P20908 DDX19B-213ENST00000568625 1681 ntTSL 2 BASIC13.23□□□□□ -0.29
COL5A1P20908 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL5A1P20908 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC13.23□□□□□ -0.29
COL5A1P20908 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL5A1P20908 CSHL1-201ENST00000259003 739 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL5A1P20908 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL5A1P20908 AC068631.1-228ENST00000354642 742 ntTSL 5 BASIC13.23□□□□□ -0.29
COL5A1P20908 IL18BP-206ENST00000393707 1037 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
COL5A1P20908 AC093495.1-201ENST00000420253 1067 ntTSL 4 BASIC13.23□□□□□ -0.29
COL5A1P20908 HNRNPA3P12-201ENST00000437410 1063 ntBASIC13.23□□□□□ -0.29
COL5A1P20908 AK2P2-201ENST00000439142 405 ntBASIC13.23□□□□□ -0.29
COL5A1P20908 AL773545.2-201ENST00000442149 472 ntBASIC13.23□□□□□ -0.29
COL5A1P20908 KRT19P4-201ENST00000443208 943 ntBASIC13.23□□□□□ -0.29
COL5A1P20908 RPSAP69-201ENST00000445739 546 ntTSL 4 BASIC13.23□□□□□ -0.29
COL5A1P20908 CSHL1-206ENST00000450719 973 ntTSL 2 BASIC13.23□□□□□ -0.29
COL5A1P20908 AP000533.1-201ENST00000456143 1177 ntBASIC13.23□□□□□ -0.29
COL5A1P20908 ALG1L15P-201ENST00000482834 794 ntBASIC13.23□□□□□ -0.29
COL5A1P20908 AC008494.1-201ENST00000497612 796 ntBASIC13.23□□□□□ -0.29
COL5A1P20908 UBE2D3-221ENST00000507845 577 ntTSL 4 BASIC13.23□□□□□ -0.29
COL5A1P20908 CHIC2-204ENST00000512964 711 ntTSL 5 BASIC13.23□□□□□ -0.29
COL5A1P20908 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC13.23□□□□□ -0.29
COL5A1P20908 OR4A49P-201ENST00000527050 632 ntBASIC13.23□□□□□ -0.29
COL5A1P20908 AL162231.1-205ENST00000544078 338 ntAPPRIS P2 TSL 2 BASIC13.23□□□□□ -0.29
COL5A1P20908 RN7SL121P-201ENST00000584223 273 ntBASIC13.23□□□□□ -0.29
COL5A1P20908 AL645608.7-201ENST00000607769 351 ntTSL 4 BASIC13.23□□□□□ -0.29
COL5A1P20908 AL162731.1-201ENST00000613248 876 ntTSL 3 BASIC13.23□□□□□ -0.29
COL5A1P20908 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC13.22□□□□□ -0.29
COL5A1P20908 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL5A1P20908 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL5A1P20908 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL5A1P20908 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL5A1P20908 PDHB-210ENST00000485460 1397 ntTSL 2 BASIC13.22□□□□□ -0.29
COL5A1P20908 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL5A1P20908 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL5A1P20908 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL5A1P20908 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
COL5A1P20908 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL5A1P20908 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC13.22□□□□□ -0.29
COL5A1P20908 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL5A1P20908 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL5A1P20908 AC026748.1-201ENST00000624349 3251 ntBASIC13.22□□□□□ -0.29
COL5A1P20908 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
COL5A1P20908 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC13.22□□□□□ -0.29
COL5A1P20908 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL5A1P20908 EDN1-201ENST00000379375 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL5A1P20908 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC13.22□□□□□ -0.29
COL5A1P20908 LINC00675-202ENST00000581851 1530 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL5A1P20908 CELA3A-202ENST00000374663 649 ntTSL 2 BASIC13.22□□□□□ -0.29
COL5A1P20908 SH3BGR-202ENST00000380631 780 ntTSL 5 BASIC13.22□□□□□ -0.29
COL5A1P20908 ACOT6-201ENST00000381139 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL5A1P20908 ATP5J-202ENST00000400087 826 ntAPPRIS P1 TSL 2 BASIC13.22□□□□□ -0.29
COL5A1P20908 AC011284.1-201ENST00000427920 856 ntTSL 4 BASIC13.22□□□□□ -0.29
COL5A1P20908 ACY3-202ENST00000529256 933 ntTSL 3 BASIC13.22□□□□□ -0.29
COL5A1P20908 METTL7AP1-201ENST00000547343 496 ntBASIC13.22□□□□□ -0.29
COL5A1P20908 LINC01490-202ENST00000551399 1260 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL5A1P20908 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC13.22□□□□□ -0.29
COL5A1P20908 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL5A1P20908 PAX6-237ENST00000638696 1203 ntTSL 5 BASIC13.22□□□□□ -0.29
COL5A1P20908 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
COL5A1P20908 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
COL5A1P20908 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL5A1P20908 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL5A1P20908 FMO6P-201ENST00000236166 1620 ntBASIC13.22□□□□□ -0.29
COL5A1P20908 TUBA1B-202ENST00000336023 1627 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
COL5A1P20908 ARFIP1-203ENST00000405727 1601 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
COL5A1P20908 UBE2A-206ENST00000625938 1381 ntTSL 2 BASIC13.22□□□□□ -0.29
COL5A1P20908 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL5A1P20908 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC13.21□□□□□ -0.29
COL5A1P20908 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
COL5A1P20908 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
COL5A1P20908 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL5A1P20908 SLC1A5-202ENST00000434726 1872 ntTSL 2 BASIC13.21□□□□□ -0.29
COL5A1P20908 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
COL5A1P20908 CCNB2-201ENST00000288207 1556 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL5A1P20908 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
COL5A1P20908 TOMM5-203ENST00000401811 789 ntTSL 2 BASIC13.21□□□□□ -0.29
COL5A1P20908 AC000077.1-201ENST00000420012 953 ntBASIC13.21□□□□□ -0.29
COL5A1P20908 RIC3-205ENST00000425599 867 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
COL5A1P20908 PRR34-AS1-203ENST00000451166 877 ntTSL 3 BASIC13.21□□□□□ -0.29
COL5A1P20908 CRYBB2P1-204ENST00000509460 701 ntTSL 3 BASIC13.21□□□□□ -0.29
COL5A1P20908 AC090282.1-201ENST00000572821 534 ntTSL 3 BASIC13.21□□□□□ -0.29
COL5A1P20908 AC068675.1-201ENST00000588996 561 ntTSL 4 BASIC13.21□□□□□ -0.29
COL5A1P20908 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC13.21□□□□□ -0.29
COL5A1P20908 Metazoa_SRP.153-201ENST00000620153 341 ntBASIC13.21□□□□□ -0.29
COL5A1P20908 AC020922.4-201ENST00000621389 339 ntBASIC13.21□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms