Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 BCYRN1-201ENST00000418539 200 ntBASIC14.96□□□□□ -0.01
APOEP02649 ACTG1P11-201ENST00000425411 1125 ntBASIC14.96□□□□□ -0.01
APOEP02649 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC14.96□□□□□ -0.01
APOEP02649 NEU3-202ENST00000526068 431 ntTSL 2 BASIC14.96□□□□□ -0.01
APOEP02649 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC14.96□□□□□ -0.01
APOEP02649 RERG-205ENST00000537647 935 ntTSL 2 BASIC14.96□□□□□ -0.01
APOEP02649 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC14.96□□□□□ -0.01
APOEP02649 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
APOEP02649 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC14.96□□□□□ -0.01
APOEP02649 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC14.96□□□□□ -0.01
APOEP02649 KLK3-207ENST00000595952 969 ntTSL 3 BASIC14.96□□□□□ -0.01
APOEP02649 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC14.96□□□□□ -0.01
APOEP02649 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC14.96□□□□□ -0.01
APOEP02649 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC14.96□□□□□ -0.01
APOEP02649 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
APOEP02649 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
APOEP02649 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
APOEP02649 PEG13-201ENST00000631594 5667 ntBASIC14.96□□□□□ -0.01
APOEP02649 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
APOEP02649 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
APOEP02649 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
APOEP02649 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
APOEP02649 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
APOEP02649 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC14.96□□□□□ -0.02
APOEP02649 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
APOEP02649 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC14.96□□□□□ -0.02
APOEP02649 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
APOEP02649 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
APOEP02649 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
APOEP02649 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
APOEP02649 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.02
APOEP02649 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC14.96□□□□□ -0.02
APOEP02649 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC14.96□□□□□ -0.02
APOEP02649 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
APOEP02649 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC14.96□□□□□ -0.02
APOEP02649 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
APOEP02649 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
APOEP02649 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC14.95□□□□□ -0.02
APOEP02649 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
APOEP02649 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
APOEP02649 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
APOEP02649 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
APOEP02649 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
APOEP02649 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC14.95□□□□□ -0.02
APOEP02649 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC14.95□□□□□ -0.02
APOEP02649 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC14.95□□□□□ -0.02
APOEP02649 TOM1L2-214ENST00000581396 5595 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
APOEP02649 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC14.95□□□□□ -0.02
APOEP02649 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC14.95□□□□□ -0.02
APOEP02649 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
APOEP02649 SNX20-202ENST00000330943 2904 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
APOEP02649 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
APOEP02649 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
APOEP02649 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
APOEP02649 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
APOEP02649 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
APOEP02649 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
APOEP02649 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
APOEP02649 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
APOEP02649 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC14.95□□□□□ -0.02
APOEP02649 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
APOEP02649 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC14.95□□□□□ -0.02
APOEP02649 AL596276.2-201ENST00000447525 331 ntBASIC14.95□□□□□ -0.02
APOEP02649 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC14.95□□□□□ -0.02
APOEP02649 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC14.95□□□□□ -0.02
APOEP02649 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC14.95□□□□□ -0.02
APOEP02649 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
APOEP02649 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC14.95□□□□□ -0.02
APOEP02649 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC14.95□□□□□ -0.02
APOEP02649 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC14.95□□□□□ -0.02
APOEP02649 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC14.95□□□□□ -0.02
APOEP02649 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
APOEP02649 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
APOEP02649 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
APOEP02649 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC14.95□□□□□ -0.02
APOEP02649 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC14.95□□□□□ -0.02
APOEP02649 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
APOEP02649 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC14.95□□□□□ -0.02
APOEP02649 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
APOEP02649 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
APOEP02649 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
APOEP02649 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
APOEP02649 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
APOEP02649 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
APOEP02649 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC14.94□□□□□ -0.02
APOEP02649 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
APOEP02649 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
APOEP02649 AP002353.1-201ENST00000528257 1599 ntBASIC14.94□□□□□ -0.02
APOEP02649 FAM149A-203ENST00000389354 1815 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
APOEP02649 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
APOEP02649 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
APOEP02649 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
APOEP02649 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC14.94□□□□□ -0.02
APOEP02649 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
APOEP02649 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
APOEP02649 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
APOEP02649 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
APOEP02649 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
APOEP02649 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
APOEP02649 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms