Protein–RNA interactions for Protein: P46934

NEDD4, E3 ubiquitin-protein ligase NEDD4, humanhuman

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4P46934 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NEDD4P46934 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
NEDD4P46934 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC16.67■□□□□ 0.26
NEDD4P46934 PHACTR2-204ENST00000397980 745 ntTSL 3 BASIC16.67■□□□□ 0.26
NEDD4P46934 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC16.67■□□□□ 0.26
NEDD4P46934 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC16.67■□□□□ 0.26
NEDD4P46934 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC16.67■□□□□ 0.26
NEDD4P46934 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
NEDD4P46934 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC16.67■□□□□ 0.26
NEDD4P46934 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
NEDD4P46934 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC16.67■□□□□ 0.26
NEDD4P46934 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC16.67■□□□□ 0.26
NEDD4P46934 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC16.67■□□□□ 0.26
NEDD4P46934 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC16.67■□□□□ 0.26
NEDD4P46934 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
NEDD4P46934 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
NEDD4P46934 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
NEDD4P46934 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC16.66■□□□□ 0.26
NEDD4P46934 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC16.66■□□□□ 0.26
NEDD4P46934 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEDD4P46934 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC16.66■□□□□ 0.26
NEDD4P46934 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEDD4P46934 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEDD4P46934 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEDD4P46934 FLJ16779-201ENST00000612722 7638 ntBASIC16.66■□□□□ 0.26
NEDD4P46934 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEDD4P46934 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEDD4P46934 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC16.66■□□□□ 0.26
NEDD4P46934 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NEDD4P46934 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC16.66■□□□□ 0.26
NEDD4P46934 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEDD4P46934 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEDD4P46934 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC16.66■□□□□ 0.26
NEDD4P46934 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEDD4P46934 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEDD4P46934 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEDD4P46934 AC072061.1-201ENST00000569710 2234 ntBASIC16.66■□□□□ 0.26
NEDD4P46934 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEDD4P46934 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
NEDD4P46934 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEDD4P46934 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC16.66■□□□□ 0.26
NEDD4P46934 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEDD4P46934 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEDD4P46934 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEDD4P46934 SHMT2-203ENST00000449049 2121 ntTSL 2 BASIC16.66■□□□□ 0.26
NEDD4P46934 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC16.66■□□□□ 0.26
NEDD4P46934 SLC25A15P3-201ENST00000505530 290 ntBASIC16.66■□□□□ 0.26
NEDD4P46934 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC16.66■□□□□ 0.26
NEDD4P46934 AL606495.2-201ENST00000605867 535 ntBASIC16.66■□□□□ 0.26
NEDD4P46934 AC009560.1-201ENST00000620208 434 ntBASIC16.66■□□□□ 0.26
NEDD4P46934 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC16.66■□□□□ 0.26
NEDD4P46934 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC16.66■□□□□ 0.26
NEDD4P46934 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC16.66■□□□□ 0.26
NEDD4P46934 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEDD4P46934 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEDD4P46934 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
NEDD4P46934 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEDD4P46934 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
NEDD4P46934 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
NEDD4P46934 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC16.66■□□□□ 0.26
NEDD4P46934 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC16.66■□□□□ 0.26
NEDD4P46934 AC073869.1-201ENST00000415574 2762 ntBASIC16.65■□□□□ 0.26
NEDD4P46934 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC16.65■□□□□ 0.26
NEDD4P46934 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
NEDD4P46934 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC16.65■□□□□ 0.26
NEDD4P46934 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
NEDD4P46934 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NEDD4P46934 SS18-201ENST00000269137 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NEDD4P46934 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC16.65■□□□□ 0.26
NEDD4P46934 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC16.65■□□□□ 0.26
NEDD4P46934 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
NEDD4P46934 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NEDD4P46934 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC16.65■□□□□ 0.26
NEDD4P46934 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
NEDD4P46934 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
NEDD4P46934 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
NEDD4P46934 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC16.65■□□□□ 0.26
NEDD4P46934 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
NEDD4P46934 AL137784.3-201ENST00000623858 2288 ntBASIC16.65■□□□□ 0.26
NEDD4P46934 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC16.65■□□□□ 0.26
NEDD4P46934 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
NEDD4P46934 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC16.65■□□□□ 0.26
NEDD4P46934 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC16.65■□□□□ 0.26
NEDD4P46934 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC16.65■□□□□ 0.26
NEDD4P46934 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC16.65■□□□□ 0.26
NEDD4P46934 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC16.65■□□□□ 0.26
NEDD4P46934 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC16.65■□□□□ 0.26
NEDD4P46934 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC16.65■□□□□ 0.26
NEDD4P46934 API5-208ENST00000531273 1868 ntTSL 2 BASIC16.65■□□□□ 0.26
NEDD4P46934 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NEDD4P46934 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
NEDD4P46934 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
NEDD4P46934 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
NEDD4P46934 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
NEDD4P46934 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC16.64■□□□□ 0.26
NEDD4P46934 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
NEDD4P46934 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
NEDD4P46934 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
NEDD4P46934 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
NEDD4P46934 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms