Protein–RNA interactions for Protein: P35523

CLCN1, Chloride channel protein 1, humanhuman

Predictions only

Length 988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN1P35523 DNAH2-202ENST00000570791 2994 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN1P35523 IGFN1-201ENST00000295591 4439 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CLCN1P35523 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN1P35523 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CLCN1P35523 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLCN1P35523 ABR-205ENST00000544583 5595 ntTSL 2 BASIC16.28■□□□□ 0.2
CLCN1P35523 ZFYVE19-209ENST00000564258 2059 ntTSL 2 BASIC16.28■□□□□ 0.2
CLCN1P35523 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC16.28■□□□□ 0.2
CLCN1P35523 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLCN1P35523 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC16.28■□□□□ 0.2
CLCN1P35523 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLCN1P35523 FGGY-201ENST00000303721 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLCN1P35523 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLCN1P35523 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC16.28■□□□□ 0.2
CLCN1P35523 SCARA5-202ENST00000380385 2934 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLCN1P35523 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLCN1P35523 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLCN1P35523 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLCN1P35523 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLCN1P35523 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLCN1P35523 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLCN1P35523 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLCN1P35523 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLCN1P35523 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC16.28■□□□□ 0.2
CLCN1P35523 HMGB3P14-201ENST00000494195 599 ntBASIC16.28■□□□□ 0.2
CLCN1P35523 HNRNPA1P13-201ENST00000510646 963 ntBASIC16.28■□□□□ 0.2
CLCN1P35523 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC16.28■□□□□ 0.2
CLCN1P35523 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC16.28■□□□□ 0.2
CLCN1P35523 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CLCN1P35523 AC009955.4-201ENST00000597192 544 ntBASIC16.28■□□□□ 0.2
CLCN1P35523 AC004233.3-201ENST00000607794 1269 ntBASIC16.28■□□□□ 0.2
CLCN1P35523 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC16.28■□□□□ 0.2
CLCN1P35523 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC16.28■□□□□ 0.2
CLCN1P35523 KIF25-AS1-202ENST00000456585 2795 ntTSL 2 BASIC16.28■□□□□ 0.2
CLCN1P35523 LARGE1-203ENST00000402320 3955 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLCN1P35523 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC16.28■□□□□ 0.2
CLCN1P35523 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
CLCN1P35523 WASHC1-201ENST00000442898 1827 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CLCN1P35523 AC004147.4-201ENST00000636421 1844 ntTSL 5 BASIC16.28■□□□□ 0.2
CLCN1P35523 SLC13A2-201ENST00000314669 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CLCN1P35523 AGER-206ENST00000375070 1463 ntTSL 5 BASIC16.28■□□□□ 0.2
CLCN1P35523 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLCN1P35523 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CLCN1P35523 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CLCN1P35523 PSMD2-205ENST00000435761 2574 ntTSL 2 BASIC16.28■□□□□ 0.2
CLCN1P35523 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
CLCN1P35523 FAM156B-201ENST00000416841 2537 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLCN1P35523 DDR1-262ENST00000508312 3073 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
CLCN1P35523 CNTROB-203ENST00000565740 2783 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
CLCN1P35523 SLC5A11-201ENST00000347898 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLCN1P35523 XRCC6-201ENST00000359308 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLCN1P35523 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLCN1P35523 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLCN1P35523 SNX14-201ENST00000314673 3486 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLCN1P35523 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
CLCN1P35523 GRM2-202ENST00000395052 3151 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
CLCN1P35523 SNX22-201ENST00000325881 3614 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLCN1P35523 CHTF18-201ENST00000262315 3090 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLCN1P35523 CADM1-206ENST00000537058 3550 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CLCN1P35523 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLCN1P35523 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLCN1P35523 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
CLCN1P35523 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC16.27■□□□□ 0.2
CLCN1P35523 C1QBPP1-201ENST00000400117 770 ntBASIC16.27■□□□□ 0.2
CLCN1P35523 MYCLP2-201ENST00000449268 967 ntBASIC16.27■□□□□ 0.2
CLCN1P35523 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
CLCN1P35523 ELK1P1-201ENST00000485699 580 ntBASIC16.27■□□□□ 0.2
CLCN1P35523 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC16.27■□□□□ 0.2
CLCN1P35523 KRT18P8-201ENST00000581937 1246 ntBASIC16.27■□□□□ 0.2
CLCN1P35523 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC16.27■□□□□ 0.2
CLCN1P35523 AL355385.1-201ENST00000606123 409 ntBASIC16.27■□□□□ 0.2
CLCN1P35523 AC007431.3-201ENST00000623221 587 ntBASIC16.27■□□□□ 0.2
CLCN1P35523 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
CLCN1P35523 KLC4-203ENST00000394056 2770 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
CLCN1P35523 COL8A1-202ENST00000273342 3029 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
CLCN1P35523 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLCN1P35523 XRCC3-202ENST00000553264 3018 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
CLCN1P35523 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CLCN1P35523 INCENP-202ENST00000394818 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
CLCN1P35523 DLGAP1-AS1-201ENST00000317114 1966 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CLCN1P35523 AC015712.2-201ENST00000560351 3688 ntTSL 2 BASIC16.27■□□□□ 0.19
CLCN1P35523 TBX4-202ENST00000393853 3398 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CLCN1P35523 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC16.27■□□□□ 0.19
CLCN1P35523 EEF2KMT-201ENST00000427587 2390 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.19
CLCN1P35523 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CLCN1P35523 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLCN1P35523 CSTF2-203ENST00000415585 2074 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CLCN1P35523 INCENP-201ENST00000278849 3698 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
CLCN1P35523 POTEB3-201ENST00000611217 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLCN1P35523 SPCS2-209ENST00000610881 2711 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
CLCN1P35523 AC138969.2-201ENST00000532739 9932 ntBASIC16.26■□□□□ 0.19
CLCN1P35523 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLCN1P35523 C9orf106-201ENST00000316786 3145 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CLCN1P35523 HK3-201ENST00000292432 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLCN1P35523 COX7A2L-202ENST00000378669 3056 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
CLCN1P35523 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLCN1P35523 RGMA-203ENST00000542321 3038 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLCN1P35523 SHROOM2P1-201ENST00000434773 2384 ntBASIC16.26■□□□□ 0.19
CLCN1P35523 VAMP4-201ENST00000236192 5159 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLCN1P35523 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms