Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 AL157791.1-201ENST00000553667 1699 ntBASIC4.46□□□□□ -1.7
SYNE1Q8NF91 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 AC011899.1-201ENST00000436489 3600 ntTSL 2 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 CORO7-202ENST00000537233 3392 ntTSL 2 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 CCNI-201ENST00000237654 2772 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC4.46□□□□□ -1.7
SYNE1Q8NF91 AC103691.2-201ENST00000618824 433 ntBASIC4.46□□□□□ -1.7
SYNE1Q8NF91 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 AC100757.4-201ENST00000626934 759 ntBASIC4.46□□□□□ -1.7
SYNE1Q8NF91 AC002472.4-201ENST00000641915 272 ntBASIC4.46□□□□□ -1.7
SYNE1Q8NF91 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 LRTM2-201ENST00000299194 3688 ntAPPRIS P1 TSL 2 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 KIAA1683-206ENST00000600328 3819 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 AC027369.3-201ENST00000530465 3707 ntBASIC4.46□□□□□ -1.7
SYNE1Q8NF91 TOLLIP-207ENST00000527886 3666 ntTSL 2 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 IQSEC3P1-201ENST00000538799 536 ntBASIC4.46□□□□□ -1.7
SYNE1Q8NF91 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 NAT9-211ENST00000580632 799 ntTSL 3 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 SYNRG-231ENST00000622045 3859 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 SLC48A1-201ENST00000442218 3010 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 RPS6KA2-206ENST00000503859 4137 ntTSL 2 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 TK2-221ENST00000620035 5060 ntTSL 2 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 IGLV3-15-201ENST00000518356 244 ntBASIC4.46□□□□□ -1.7
SYNE1Q8NF91 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 ZC3H18-202ENST00000452588 3211 ntTSL 2 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 AL118506.1-201ENST00000601296 3082 ntBASIC4.46□□□□□ -1.7
SYNE1Q8NF91 TMEM246-202ENST00000374848 4244 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 CRHR2-201ENST00000341843 3131 ntTSL 5 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 SPATA6-203ENST00000371847 4973 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 NLGN3-206ENST00000612180 3319 ntTSL 5 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 AC239868.1-201ENST00000369385 493 ntBASIC4.46□□□□□ -1.7
SYNE1Q8NF91 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 AC009779.1-201ENST00000551138 283 ntBASIC4.46□□□□□ -1.7
SYNE1Q8NF91 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 CBL-203ENST00000634586 3457 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 AC003102.2-201ENST00000589195 1469 ntBASIC4.46□□□□□ -1.7
SYNE1Q8NF91 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 RGL1-202ENST00000360851 4724 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 HS1BP3-202ENST00000402541 4358 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 ADGRA1-201ENST00000392606 3438 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SYNE1Q8NF91 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms