Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 AC013553.1-201ENST00000560906 267 ntBASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 USB1-205ENST00000561743 1135 ntTSL 3 BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 AL118516.1-201ENST00000564152 670 ntBASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 NT5C-204ENST00000578337 582 ntTSL 2 BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 PEBP1P2-201ENST00000603980 558 ntBASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 AC006483.2-201ENST00000609813 515 ntBASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 HMGB1P24-201ENST00000611897 328 ntBASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 AC007952.5-201ENST00000572818 1486 ntBASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
NPAS3Q8IXF0 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 AC011498.7-201ENST00000624986 2027 ntBASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 KRT8P43-201ENST00000406052 1458 ntBASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 PRSS3P1-201ENST00000503996 742 ntBASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 RPS23-207ENST00000511844 530 ntTSL 2 BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 RN7SKP155-201ENST00000516031 288 ntBASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 TNFSF13B-206ENST00000542136 495 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 AL132994.1-201ENST00000554098 400 ntBASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 MT2A-202ENST00000561491 581 ntTSL 2 BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 COX5A-205ENST00000568517 582 ntTSL 3 BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 AC010632.2-201ENST00000588369 1224 ntBASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 AC008972.2-201ENST00000606587 494 ntBASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 AL009176.1-201ENST00000607876 650 ntBASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 TMEM14EP-202ENST00000639378 1296 ntBASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
NPAS3Q8IXF0 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 RPL13AP3-202ENST00000494676 1473 ntBASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 AC007686.3-201ENST00000619017 3487 ntBASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 OR7E115P-201ENST00000382617 1024 ntBASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 KRT18P46-201ENST00000435568 1279 ntBASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC14.65□□□□□ -0.06
NPAS3Q8IXF0 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms