Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 AC068631.1-228ENST00000354642 742 ntTSL 5 BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 AIG1-203ENST00000367596 559 ntTSL 2 BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 PDE4DIP-202ENST00000369347 1137 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 HCRTR1-201ENST00000373705 1170 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 PHBP10-201ENST00000416467 784 ntBASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 PGK1P2-201ENST00000431702 1214 ntBASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 IGHV3-43-201ENST00000434710 434 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 AL356000.1-201ENST00000441073 1238 ntBASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 AC092295.1-201ENST00000446262 434 ntTSL 3 BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 AC026412.1-206ENST00000502273 206 ntBASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 AC087442.1-201ENST00000525563 249 ntTSL 2 BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 AC132825.4-202ENST00000578792 434 ntBASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 AC009041.4-201ENST00000620075 638 ntBASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC88AQ3V6T2 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 BPIFB6-201ENST00000349552 1362 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 HNRNPC-205ENST00000553300 1375 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 AL513165.1-201ENST00000413915 289 ntTSL 3 BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 AP001615.1-201ENST00000423276 461 ntTSL 3 BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 KCNK15-AS1-202ENST00000427303 528 ntTSL 5 BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 KRT18P15-201ENST00000458108 1291 ntBASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 AP003040.1-201ENST00000532044 1024 ntBASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 AL162231.1-205ENST00000544078 338 ntAPPRIS P2 TSL 2 BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 SLC13A2-205ENST00000545060 1276 ntTSL 5 BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 AL139316.1-201ENST00000555643 568 ntTSL 3 BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 AL031710.1-201ENST00000570022 468 ntTSL 2 BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 AL513478.2-202ENST00000621949 835 ntTSL 3 BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 AC093797.1-201ENST00000411847 1789 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC88AQ3V6T2 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 HIGD2A-201ENST00000274787 668 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 IL1F10-201ENST00000341010 1013 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 MIR339-201ENST00000362153 94 ntBASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 AC011284.1-201ENST00000427920 856 ntTSL 4 BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 AL357033.2-201ENST00000430184 739 ntTSL 3 BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 AL773545.2-201ENST00000442149 472 ntBASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 RN7SL605P-201ENST00000577229 281 ntBASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 AL954722.1-201ENST00000431238 259 ntBASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 AC103563.2-201ENST00000442200 597 ntTSL 5 BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 AC133141.1-201ENST00000443015 339 ntBASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 CD81-209ENST00000492627 886 ntTSL 3 BASIC16.97■□□□□ 0.31
CCDC88AQ3V6T2 AC026120.2-201ENST00000617239 309 ntBASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms