Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
HDAC4P56524 RUSC1-204ENST00000368352 3403 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
HDAC4P56524 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC14.92□□□□□ -0.02
HDAC4P56524 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
HDAC4P56524 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC14.92□□□□□ -0.02
HDAC4P56524 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
HDAC4P56524 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC14.92□□□□□ -0.02
HDAC4P56524 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HDAC4P56524 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HDAC4P56524 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HDAC4P56524 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HDAC4P56524 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
HDAC4P56524 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HDAC4P56524 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC14.92□□□□□ -0.02
HDAC4P56524 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
HDAC4P56524 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HDAC4P56524 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
HDAC4P56524 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC14.92□□□□□ -0.02
HDAC4P56524 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HDAC4P56524 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HDAC4P56524 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC14.92□□□□□ -0.02
HDAC4P56524 OARD1-212ENST00000482515 832 ntTSL 2 BASIC14.92□□□□□ -0.02
HDAC4P56524 AC125604.1-201ENST00000496255 707 ntBASIC14.92□□□□□ -0.02
HDAC4P56524 RCC2P8-201ENST00000502779 1035 ntBASIC14.92□□□□□ -0.02
HDAC4P56524 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
HDAC4P56524 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC14.92□□□□□ -0.02
HDAC4P56524 EMC4-209ENST00000559421 497 ntTSL 2 BASIC14.92□□□□□ -0.02
HDAC4P56524 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HDAC4P56524 KC6-205ENST00000599934 556 ntTSL 4 BASIC14.92□□□□□ -0.02
HDAC4P56524 ASNA1-205ENST00000611688 1214 ntTSL 5 BASIC14.92□□□□□ -0.02
HDAC4P56524 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HDAC4P56524 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HDAC4P56524 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HDAC4P56524 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC14.92□□□□□ -0.02
HDAC4P56524 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HDAC4P56524 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC14.92□□□□□ -0.02
HDAC4P56524 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HDAC4P56524 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC14.92□□□□□ -0.02
HDAC4P56524 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
HDAC4P56524 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC14.92□□□□□ -0.02
HDAC4P56524 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC14.92□□□□□ -0.02
HDAC4P56524 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HDAC4P56524 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC14.92□□□□□ -0.02
HDAC4P56524 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
HDAC4P56524 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
HDAC4P56524 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC14.92□□□□□ -0.02
HDAC4P56524 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC14.92□□□□□ -0.02
HDAC4P56524 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
HDAC4P56524 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC14.92□□□□□ -0.02
HDAC4P56524 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HDAC4P56524 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC14.92□□□□□ -0.02
HDAC4P56524 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HDAC4P56524 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC14.92□□□□□ -0.02
HDAC4P56524 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HDAC4P56524 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
HDAC4P56524 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
HDAC4P56524 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HDAC4P56524 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HDAC4P56524 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HDAC4P56524 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HDAC4P56524 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC14.92□□□□□ -0.02
HDAC4P56524 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
HDAC4P56524 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
HDAC4P56524 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC14.91□□□□□ -0.02
HDAC4P56524 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
HDAC4P56524 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC14.91□□□□□ -0.02
HDAC4P56524 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
HDAC4P56524 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 AL928654.5-201ENST00000624831 2501 ntBASIC14.91□□□□□ -0.02
HDAC4P56524 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC14.91□□□□□ -0.02
HDAC4P56524 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
HDAC4P56524 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC14.91□□□□□ -0.02
HDAC4P56524 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
HDAC4P56524 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC14.91□□□□□ -0.02
HDAC4P56524 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC14.91□□□□□ -0.02
HDAC4P56524 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC14.91□□□□□ -0.02
HDAC4P56524 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC14.91□□□□□ -0.02
HDAC4P56524 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC14.91□□□□□ -0.02
HDAC4P56524 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC14.91□□□□□ -0.02
HDAC4P56524 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HDAC4P56524 MAX-218ENST00000557746 571 ntTSL 4 BASIC14.91□□□□□ -0.02
HDAC4P56524 SYT17-208ENST00000568433 812 ntTSL 3 BASIC14.91□□□□□ -0.02
HDAC4P56524 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC14.91□□□□□ -0.02
HDAC4P56524 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC14.91□□□□□ -0.02
HDAC4P56524 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC14.91□□□□□ -0.02
HDAC4P56524 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms