Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RANBP17-219ENST00000523189 4588 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HOXA1P49639 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HOXA1P49639 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HOXA1P49639 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HOXA1P49639 MIR1233-2-201ENST00000408138 82 ntBASIC11.95□□□□□ -0.5
HOXA1P49639 MIR1233-1-201ENST00000408722 82 ntBASIC11.95□□□□□ -0.5
HOXA1P49639 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC11.95□□□□□ -0.5
HOXA1P49639 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC11.95□□□□□ -0.5
HOXA1P49639 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC11.95□□□□□ -0.5
HOXA1P49639 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
HOXA1P49639 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC11.95□□□□□ -0.5
HOXA1P49639 AC009477.1-201ENST00000452936 217 ntBASIC11.95□□□□□ -0.5
HOXA1P49639 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC11.95□□□□□ -0.5
HOXA1P49639 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC11.95□□□□□ -0.5
HOXA1P49639 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC11.95□□□□□ -0.5
HOXA1P49639 AC104794.3-201ENST00000566840 1248 ntBASIC11.95□□□□□ -0.5
HOXA1P49639 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC11.95□□□□□ -0.5
HOXA1P49639 PRR29-204ENST00000577953 565 ntTSL 4 BASIC11.95□□□□□ -0.5
HOXA1P49639 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC11.95□□□□□ -0.5
HOXA1P49639 AL390955.2-201ENST00000603032 514 ntBASIC11.95□□□□□ -0.5
HOXA1P49639 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC11.95□□□□□ -0.5
HOXA1P49639 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC11.95□□□□□ -0.5
HOXA1P49639 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC11.95□□□□□ -0.5
HOXA1P49639 GPD1-201ENST00000301149 3082 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HOXA1P49639 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC11.95□□□□□ -0.5
HOXA1P49639 ZBED2-201ENST00000317012 2311 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
HOXA1P49639 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HOXA1P49639 SLC7A7-201ENST00000285850 2263 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
HOXA1P49639 SERPINB1-201ENST00000380739 2619 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HOXA1P49639 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC11.95□□□□□ -0.5
HOXA1P49639 DLGAP1-203ENST00000400147 5258 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HOXA1P49639 DLGAP1-206ENST00000400155 5257 ntTSL 2 BASIC11.95□□□□□ -0.5
HOXA1P49639 MPP2-219ENST00000612133 4938 ntTSL 5 BASIC11.95□□□□□ -0.5
HOXA1P49639 TCAM1P-207ENST00000485295 1537 ntBASIC11.95□□□□□ -0.5
HOXA1P49639 LOXL3-204ENST00000409549 2897 ntTSL 2 BASIC11.95□□□□□ -0.5
HOXA1P49639 GMEB2-203ENST00000370077 4223 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HOXA1P49639 FNIP1-205ENST00000615660 6589 ntTSL 5 BASIC11.95□□□□□ -0.5
HOXA1P49639 BAIAP3-203ENST00000421665 3875 ntTSL 2 BASIC11.95□□□□□ -0.5
HOXA1P49639 DAB2IP-202ENST00000309989 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
HOXA1P49639 SLFNL1-AS1-201ENST00000626479 4800 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HOXA1P49639 EGFR-207ENST00000455089 3844 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HOXA1P49639 AC215219.1-201ENST00000400706 1817 ntBASIC11.95□□□□□ -0.5
HOXA1P49639 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC11.95□□□□□ -0.5
HOXA1P49639 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC11.95□□□□□ -0.5
HOXA1P49639 AC024075.2-201ENST00000598112 1473 ntBASIC11.95□□□□□ -0.5
HOXA1P49639 MKL1-205ENST00000407029 4091 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HOXA1P49639 SLX4-201ENST00000294008 7307 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
HOXA1P49639 MYO7A-205ENST00000458637 7336 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HOXA1P49639 AC008806.1-201ENST00000624962 2443 ntBASIC11.95□□□□□ -0.5
HOXA1P49639 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC11.95□□□□□ -0.5
HOXA1P49639 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC11.95□□□□□ -0.5
HOXA1P49639 HNRNPMP1-201ENST00000560685 1768 ntBASIC11.95□□□□□ -0.5
HOXA1P49639 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HOXA1P49639 CARS-AS1-201ENST00000499962 2664 ntTSL 2 BASIC11.94□□□□□ -0.5
HOXA1P49639 FAM157A-203ENST00000634862 6083 ntTSL 5 BASIC11.94□□□□□ -0.5
HOXA1P49639 TMPRSS7-201ENST00000419127 2317 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXA1P49639 C1S-202ENST00000360817 2635 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXA1P49639 IRAK1BP1-201ENST00000369940 5656 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXA1P49639 C6orf62-202ENST00000378119 4134 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXA1P49639 SUPT7L-203ENST00000405491 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXA1P49639 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
HOXA1P49639 BAHD1-203ENST00000561234 4698 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXA1P49639 INSC-207ENST00000528567 2237 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
HOXA1P49639 SLC24A4-204ENST00000531433 4531 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
HOXA1P49639 CCDC60-201ENST00000327554 2450 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXA1P49639 ITPRIP-201ENST00000278071 6807 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXA1P49639 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
HOXA1P49639 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXA1P49639 ZNF654-204ENST00000636215 6446 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
HOXA1P49639 ADCY7-201ENST00000254235 6138 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXA1P49639 FLNA-203ENST00000369850 8382 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXA1P49639 RPS15-201ENST00000233609 534 ntTSL 2 BASIC11.94□□□□□ -0.5
HOXA1P49639 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
HOXA1P49639 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXA1P49639 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXA1P49639 RASL12-203ENST00000434605 982 ntTSL 2 BASIC11.94□□□□□ -0.5
HOXA1P49639 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
HOXA1P49639 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC11.94□□□□□ -0.5
HOXA1P49639 AP001582.1-201ENST00000525856 295 ntBASIC11.94□□□□□ -0.5
HOXA1P49639 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC11.94□□□□□ -0.5
HOXA1P49639 ARL16-202ENST00000570561 768 ntTSL 2 BASIC11.94□□□□□ -0.5
HOXA1P49639 RPS15-205ENST00000586686 562 ntTSL 5 BASIC11.94□□□□□ -0.5
HOXA1P49639 RPS15-208ENST00000591804 711 ntTSL 5 BASIC11.94□□□□□ -0.5
HOXA1P49639 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXA1P49639 AC092364.2-202ENST00000597012 1073 ntBASIC11.94□□□□□ -0.5
HOXA1P49639 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC11.94□□□□□ -0.5
HOXA1P49639 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXA1P49639 CENPP-203ENST00000375587 8766 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXA1P49639 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXA1P49639 LRRC59-203ENST00000576448 1531 ntBASIC11.94□□□□□ -0.5
HOXA1P49639 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXA1P49639 Z98257.2-202ENST00000641138 1548 ntBASIC11.94□□□□□ -0.5
HOXA1P49639 SIRT2-201ENST00000249396 2070 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXA1P49639 SIRT2-204ENST00000392081 2062 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXA1P49639 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC11.94□□□□□ -0.5
HOXA1P49639 ARID4A-202ENST00000355431 5891 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
HOXA1P49639 MRVI1-202ENST00000424001 5815 ntTSL 5 BASIC11.94□□□□□ -0.5
HOXA1P49639 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
HOXA1P49639 PCDHGB3-201ENST00000576222 4727 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
HOXA1P49639 INTS4P2-202ENST00000614726 2019 ntBASIC11.94□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms